RNA id: TCONS_00031773


Basic Information

Item Value
RNA id TCONS_00031773
length 1350
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_016093
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3416683 ~ 3419890 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTGCAGTATGGGAATGAAAATGGAAGGTTTAAGGTTGGAAGGTTGACTTGCTGTTGCTGCATTCAGAAAACAACATAATGCAAAGGATGATTTTGTTTGGTGGTGCTTTGAGGGAGATTGTGGTGCGGTCAGGCGGACTTCAGGCGCACTATTTTCTATGTACAAGCAGGACTCGGATTAAAACACACTCTCAAACTCGAGCTGCCAGCAGTACAGCACACTTTAGCTGTTACAGATTACCACACAGGACTGTCCTCAATGTATCTGGACAAGACACGAGCTCATTTCTTCAAGGAATAATCACCAATGACATGAATCTTCTGGGAGAGGATTCACTGAATGCCATGTACGCTCACGTGCTCAATGTTCAAGGCAGGACACTGTACGACATCATCCTTTACAGTTTAAAAGGAAACCCAGATGGACTCAACGGTGTACTTCTGGAGTGTGACAGCACAGTGCAGGACTCTGTTATGCAGCTTCTGAAAGTCTACAAGATACGTCGCAAAGTGAACCTCAGCGTATGTCCGAGTCTCTCGCTCTGGGCTCTGCTACCTCACAGTAAAGAAGCTGTCCTGGGAAGGCCTGATGTTACCACTACTGATAAAGTGCTGGTTTTGGAGAAAGACCCAAGAACTGAGCTCATGGGCTGGAGAATGATCACCAGCGCTCAGGACAATCCACTGGACATTGTGTCTGCTTGTCGACTGGGCAACACTGAAGAATACCACAGGCATCGCTATGAGATTGGACTGCCTGAAGGAGTCGGAGATCTTCCCCCAGGTGAGGCTCTTCCACTGGAAGCCAATCTGGTCTACATGCAGGGAATCAGCTTCAGCAAGGGCTGCTACATCGGGCAGGAGCTGACGGCCAGAACTCACCACACCGGCGTGATAAGAAAGCGTCTGATGCCTGTCAGCTTATCTGCTCCAGCCGAGAAGCTCAACCAGGGGTCAGCTCTTCAGACAGAGGGAGGAAAACCAGCAGGTAAATACAGGACAGGAGTGGACAAGCTGGGACTGAGCCTCGTACGCCTGGCTCACGCCAAAGAAACACTCCAGCTCAAATCATCTGGTGACGAGACGGTGACTGTACTAGCCTCTGTGCCCGACTGGTGGCCAAAAACCCCCCAAGAGAAATAAATCACAAACACTAGAAATGTAAGAGTGTCATATTTGAAGCCAGAACATTTACACAGAGGTACCGATTGACACCTTGAAATAAAAGAAGTTTCTTTGGGTTGATCTTCTAAAAGAGTTCACATTGCAATTGTATGGAGCCCCTTCTCGGGAACATGCagaatatactgacactgaggaaaactgttgaataaagttacACAGATTA

Function

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060929-712 Acts upstream of or within heme biosynthetic process. Is expressed in intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 74 and multiple mitochondrial dysfunctions syndrome 3. Orthologous to human IBA57 (iron-sulfur cluster assembly factor IBA57).

Ensembl:

ensembl_id ENSDART00000055618

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031772 lncRNA downstream 476 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033761 lncRNA downstream 13649 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00033760 lncRNA downstream 13663 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033759 lncRNA downstream 922383 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00031754 lncRNA downstream 1244044 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033762 lncRNA upstream 99693 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00033348 lncRNA upstream 694121 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031790 lncRNA upstream 1359210 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00031791 lncRNA upstream 1392804 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00033763 lncRNA upstream 2029891 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031771 mRNA downstream 12890 3401275 ~ 3403793 (-) True XLOC_016091
TCONS_00031769 mRNA downstream 13663 3387390 ~ 3403020 (-) False XLOC_016091
TCONS_00031767 mRNA downstream 257764 3106237 ~ 3158919 (-) True XLOC_016089
TCONS_00031766 mRNA downstream 339656 3062737 ~ 3077027 (-) True XLOC_016088
TCONS_00031765 mRNA downstream 370820 3026802 ~ 3045863 (-) True XLOC_016087
TCONS_00031774 mRNA upstream 15998 3435888 ~ 3437862 (-) True XLOC_016094
TCONS_00031775 mRNA upstream 183699 3603589 ~ 3616363 (-) False XLOC_016096
TCONS_00031776 mRNA upstream 183822 3603712 ~ 3611960 (-) False XLOC_016096
TCONS_00031777 mRNA upstream 183868 3603758 ~ 3614005 (-) True XLOC_016096
TCONS_00031778 mRNA upstream 210417 3630307 ~ 3678029 (-) False XLOC_016097
TCONS_00031770 other downstream 13649 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031768 other downstream 290609 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031757 other downstream 1115249 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031736 other downstream 2460458 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 2518764 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031782 other upstream 694228 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 696424 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031786 other upstream 1151123 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031796 other upstream 1483670 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 1487906 4907796 ~ 4925127 (-) False XLOC_016107

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000247_00231712_00239345.mRNA False 1621 mRNA 0.43 3 CI01000247 231313 ~ 239481 (+)