RNA id: TCONS_00033762


Basic Information

Item Value
RNA id TCONS_00033762
length 346
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_016095
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3519583 ~ 3520166 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTGATCTGTTTATAAGCGGACATacaagcgatccgctgatgaatcgactgatttCCATggctttgaaacgctccagtgtccgtgtatctgtgtttgcacttggcaGCAAAGAATctgttgacatttttaattaccgattggtaccaaacacgatacttttgacaaccctatagTTCTGATAACTATTCAAGTAAACCATACGAGACCAAACCAATGCTTTAAAAGCCAGTCGCTGAAGTAATGGCTGAGAGAGTCTGTGTGGCTACCGTCCGCAAGGCAAACGTGGGCACAGAGGGATCCATGAGGAGGAAGAGCTGGTGTTGAGGACTCTGAAGACCAAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031772 lncRNA downstream 103376 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033761 lncRNA downstream 116549 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00033760 lncRNA downstream 116563 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033759 lncRNA downstream 1025283 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00031754 lncRNA downstream 1346944 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033348 lncRNA upstream 593845 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031790 lncRNA upstream 1258934 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00031791 lncRNA upstream 1292528 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00033763 lncRNA upstream 1929615 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 1943242 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031774 mRNA downstream 81721 3435888 ~ 3437862 (-) True XLOC_016094
TCONS_00031773 mRNA downstream 99693 3416683 ~ 3419890 (-) True XLOC_016093
TCONS_00031771 mRNA downstream 115790 3401275 ~ 3403793 (-) True XLOC_016091
TCONS_00031769 mRNA downstream 116563 3387390 ~ 3403020 (-) False XLOC_016091
TCONS_00031767 mRNA downstream 360664 3106237 ~ 3158919 (-) True XLOC_016089
TCONS_00031775 mRNA upstream 83423 3603589 ~ 3616363 (-) False XLOC_016096
TCONS_00031776 mRNA upstream 83546 3603712 ~ 3611960 (-) False XLOC_016096
TCONS_00031777 mRNA upstream 83592 3603758 ~ 3614005 (-) True XLOC_016096
TCONS_00031778 mRNA upstream 110141 3630307 ~ 3678029 (-) False XLOC_016097
TCONS_00031779 mRNA upstream 111115 3631281 ~ 3654983 (-) True XLOC_016097
TCONS_00031770 other downstream 116549 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031768 other downstream 393509 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031757 other downstream 1218149 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031736 other downstream 2563358 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 2621664 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031782 other upstream 593952 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 596148 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031786 other upstream 1050847 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031796 other upstream 1383394 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 1387630 4907796 ~ 4925127 (-) False XLOC_016107