RNA id: TCONS_00031783


Basic Information

Item Value
RNA id TCONS_00031783
length 87
RNA type miRNA
GC content 0.36
exon number 1
gene id XLOC_016100
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4114011 ~ 4118815 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTACTTGGTGTACATACTTCTTTATGTGCCCATATGAACATATAAAAGCTATGGAATGTAAAGAAGTATGTATTCTTGGTCAGGT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0072350 tricarboxylic acid metabolic process biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006101 citrate metabolic process biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0009060 aerobic respiration biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000160047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033762 lncRNA downstream 596148 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 700107 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033761 lncRNA downstream 713280 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00033760 lncRNA downstream 713294 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033759 lncRNA downstream 1622014 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00031790 lncRNA upstream 662700 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00031791 lncRNA upstream 696294 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00033763 lncRNA upstream 1333381 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 1347008 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 1358143 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031781 mRNA downstream 45464 4044636 ~ 4070850 (-) True XLOC_016099
TCONS_00031780 mRNA downstream 83582 4019538 ~ 4032732 (-) True XLOC_016098
TCONS_00031778 mRNA downstream 438285 3630307 ~ 3678029 (-) False XLOC_016097
TCONS_00031779 mRNA downstream 461331 3631281 ~ 3654983 (-) True XLOC_016097
TCONS_00031777 mRNA downstream 502309 3603758 ~ 3614005 (-) True XLOC_016096
TCONS_00031784 mRNA upstream 374204 4490604 ~ 4496358 (-) False XLOC_016101
TCONS_00031785 mRNA upstream 374424 4490824 ~ 4494239 (-) True XLOC_016101
TCONS_00031787 mRNA upstream 514935 4631335 ~ 4642407 (-) True XLOC_016103
TCONS_00031788 mRNA upstream 612755 4729155 ~ 4787566 (-) False XLOC_016104
TCONS_00031789 mRNA upstream 659448 4775848 ~ 4787576 (-) False XLOC_016104
TCONS_00031782 other downstream 2098 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031770 other downstream 713280 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031768 other downstream 990240 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031757 other downstream 1814880 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031736 other downstream 3160089 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031786 other upstream 454613 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031796 other upstream 787160 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 791396 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031799 other upstream 826560 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031800 other upstream 923767 5040167 ~ 5043850 (-) False XLOC_016107