RNA id: TCONS_00031788


Basic Information

Item Value
RNA id TCONS_00031788
length 5146
RNA type mRNA
GC content 0.49
exon number 14
gene id XLOC_016104
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4729155 ~ 4797512 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgacaaaaagaaaacaatcttTTAATGCAGACCTCAAGCGCAGATCTTTCCGATTCTTTTATCACGTCCACCGTTGCTGTCATCTGAGTGAGGGATTCGGGAATAGAAGGAACCGTCCTATTAATAGCTGGATGAACAGAGGAATGAACAACAAGTCAAGTACATCTTTCCAGACGTGGTGCAATGAGGACGTCACCTTATAATCTTTGCGATTCTCTGTCAGTCTCCAGAGCCCGCGGTGTGAACTTTGTTTTGGGATGTTCTGACTTAGCTGCCAAGTGAACAGTTCCCTTTGGCagacccctctctctctctctctttggcgCTGTGGTGTTTTCTTGCCTTGGCCCACGCTGTTCCCCCGCATACACACGTTCTTTCTCCATGCTAGCGCTGAGCTTTGATTAAAGGAGCTTAATGTGGATTGCCAAGGGATGGAATGTAGTATGTGGGCTGCGCAACTTCAGGAGACCTTACAACTGAGAGACCTTCGGTTTGGAGTCGTCTCGAACTCTGTTTTCCAGCTAAGGAGTTTCAGAAACTTCGACTGAGCACTTTTTGGGGATATTTTCCAAACTCAAGATGCGTCGTTTTGACAAGCTCAAAAAGTCGTTCCCATTTCTTGCTCACTTCCATGTGTACAGAAAGCTGGGCAGCAGTATGCAGTGTGAAGAGGGCACCGAGTGGCTGCTGGAGCTGCTAATGGAAGTGCAACTGCAGCAGTACTTCCTGCGCATCCGAGATGAGCTCAACATTACACGACTCTCACACTTTGACTACGTCAAGAATGAGGACCTGGAGAAGATCGGCATGGGCCGGCCTGGTCAAAGACGGCTGTGGGAAGCAGTGAAGAGGAGAAAAACTATGTGCAAACGAAAATCATGGATGAGCAAGGTGTTCAGTGGCAAGAGACCAGAAGGAGACTTCAATCCTCAACCAGCCAGTACTTTCCGGAAACTCTCTCCTACTCCTCCGTTGGTGGATGGCCAGCAGCAGGCACTCACCTGCCTCATCAGCGAGAAAGACCTGGCCCTCTTTGAGAAACTTGGTGATGGCTCCTTCGGTGTGGTCAAGCGCGGAGAATGGTTCACGCCAAACGGAAAAGTGCTCAATGTGGCAGTGAAGTGTCTGAAGACGGACGTGCTCAACCAGCCAGATGCTCTGGACGACTTCATCCGTGAGGTCAACGCCATGCACTCGCTCGACCACCAGAACCTCATCCGTCTCTATGGAGTCGTCCTCACACACCCCATGAAGATGGTGACTGAGCTTGCCCCTCTCGGCTCCATGCTGGACCGCTTGCGAAAGACTCTGGGCCATTTCCTCATCTCTACATTGTGTCAGTACACCATCCAGATATCCAATGGCATGGGTTACCTGGAGTCCAAACGCTTCATCCACCGGGACCTGGCTGCTAGAAACATCTTGCTGGCTTCAAGCGAGCAGGTCAAAATCGGAGACTTCGGACTGATGAGAGCACTTCCCAAAAACGACGACCATTACGTCATGCAGGAGCACCGCAAAGTCCCGTTTGCCTGgtGTGCCCCAGAGAGCCTGAAGACACGCACGTTTTCTCATGCCACAGACACATGGATGTTTGGTGTGACGCTGTGGGAAATGTTTACTTATGGTCAGGAGCCCTGGCTGGGCCTAAATGGGAGTCAGATCCTTCACAAAATTGACAAGGAGGGTGAAAGGCTGCCCAAGCCAGAGGACTGTCCTCAAGACCTTTATAATGTAATGATGCAGTGCTGGGCTCAAAAACCAGATGACCGGCCCACCTTTGTTGCTCTAAGGGAGTTTCTGGTGGAGACCATGCCTACAGACATGAGGGCTCTGCAAGACTTTGATGAACCCGACAAGCTTCAAATCCAGATGGATGATGTCATTACCATCATAGAGGGCAGGGCAGAGAACTACTGGTGGAGAGGTCAGAACAAGCGCACCCTGAAGGTTGGTCAGTTTCCCAGGAACACAGTGACGTCAGTGGCAGGTCTGTCGGCCCACGACATCAGCAGACCACTCAAGAACAGCTTCATCCACACAGGCCATGGAGACACCAACCCGCACCGCTGCTGGGGCTTTCCTGACAGAATTGATGATCTTTATCTTGGGAATCCCATGGATCCGCCAGATGTTCTTGGGCTGGATTTGAACTCTGCCAGACCAACTCAACTCCCCGGACGGgcaaaaaAACCCTGTTATGATGCTGTTGCTGAAGATGAGGAACAAACATATTCCGCCCTTCGAAGGCTCTCTTTAAAGAAAAAGGGCCTTAAACTCAAACCAGCCGCCTGGGTATCAGCTACCAGATTAGGGGATCGCTCCTCATATGGTGCACGGACTCCAGGGGGCAGCACGCCTACAGAAGTCTCTCTCATAGACTTCGGAGAAGAGTATCCATCAGCTACATCATCACCCTCTCCTGTGGCGGAGATTCAGATCCCAACCCTTGCTAAGCTAGCTCTTGACGCAGAGAACATTTTGGACAGAACTCCTCCCCAGAGTCCCTCGCGGACTCTACCGCGGCCTCTTCACCCTACCCCAGTGGTGGACTGGGACGCCCGGCCTCTCCCTCCACCCCCAGCCTACGACGATGTAGCACAAGACGAGGACGACTTTGAAGTAAGTTCCATAAATAGTGCGGAACGAGCAGATGGCGAGCCTTGCTCTCCACACGCACCCTGCACTCCTACTGGCGAGAGCAAACCTCATGTAGAAGACAATTTATTTTTGCCCTGCAGGCTGAGCAATGCCTGCACCTTCTCGCAGTCCGCCGAGATCTTCCAAGAGCTCCAGCAGGAGTGCATGAGGCACCTTAAAGTACCTGTGAACTCTACCAGTCCTGGACTGGAACCGCATCGACAGATTGTCCTCACTTTTTCTGAAGACAAACCCCAGATACCGCCACGAATCCCTATACCACCTCGTCCAGTCAAACGTGCTGGTGGCGATTACAGTCGCTTGTCTGGTGACCTGTCTCCAGTTTTTGGAAATGAGGACGATAAAGAGCGTCCGCCTCAGATTCCCCCTCGCGACCCATTCTCTCAGCCGGGATCTCGGACACCGAGTCCCCATGTGGGATCTCCTCAGACTCGTAGTAGCCTCTGCTCCGCTGCCTCCATCTACGGCTCATCCTACCTCTCCACCTCACCCGCTAAACTCATGCCGACCACGCAGAGCTTTGCCTCCGATCCCAAATATGCTGCTCCCAAGGTCATCCAGGCACAGGGCAAAGATAAGGAGCCGACCAAAGGGCCCTGCATTCTGCCTATCGTACGTGATGGCAAGAAGGTCAGCAACACGCACTACTACCTCCTGCCCGAGAGGCCTCCGTATCTGGATCGCTACGATAAGTTCTTCAGAGAGGCTGAGTGTGGTGAGGAGAAGAAGCAGGTGAACACCGCCACTGTCAAGCCCATGGTTCATCAGCACGGAGAACTCAAGTCCAACTTCTCCTCCAACAACAACAGCAGTCTGACAGCTTCTGGATTTAGAGGCGGACTGAAGAGCTCCTTTAGCCTGTGCCGAGTAAGCTCCGATGGCTCGTTTAACAAAGCTGACAGCAACCATGACAGAGTCAGACTGGTGCAGGAGGCCGTTCATGGAGTAACAATTGAAGAATGCCTGACGGCTCTACAGAATCACAGCTGGAATGTGCAGAAGGCTGTGCACTACTTGAAGGTGGAGCAGCTCTTCTGTCTGGGGCTGAAGACCCGGCTGGAGTGTCAGCAGATTCTGGAGATGTATGACTGGAATCTGGAGTTAGCCAGCACACAAATGCTGGACTCCTATGGCTCAGTAAAGCTACGACGATGATGTTTGGGAAAAACCTCATGCCCTAAAAGATGTTTGAGAGGGACACTGAGAGCCAACCAGAACTCTATCCTAGCACATTttacctctgtgtgtgtgtgtgtatgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtacaagacAGTGACTGGGTTCCTCCAGAACTTTCTCTCCAGAGTGCAATACCGAGTTCACAGGTCAAAGTGAATAGCAACAGATGGAAAAcaaggtgctgcttgtcaatttttCATACTTTTTTATGAAAGCCTGTACTGATGTAAATATTATCAGATGTTTTGCATATACGTGTGCATCTGATTAGAGTTTTTCTTAGATATTtgtcatgttttatttaatgttgttcgGGGGTCACCTTTAAGAATGAGTATCATGCGTAGTtcgactgttgtgtgtttgtttaaaccGTTGAGCTATCATcctttgttgatgttgttttaagaCCCTCGCTTTGCCTttttttggtattattattattattatttttgtacttGTTCATGAGTCACTCATTGTAAGCGTCCGACTTTGCTGGTGCCGTCAGTAAAGTCACCAAATGATTATTTGCACAAAAACTGCTTCCACGTAGAAGGCAAAAAACCTTTGTACGAGCATTAGAAGACCTCCAACGCACACATATAACCGACTGAATCTCTTCTTCTTGCATTTTTtagttcagtgttttttttttatttttattactattatttatcttttaaatataaagcattactttatactttatataaagCACAACTGTTAGCACCAGTCTCAAATACTTATTCAGTGATGTTTCTGCCATCATATCACTCCAATGTTGGAGATCGTCCAGTGAAGTGTTGGACCTGTCAAACTTCTTTTATAAAATCCCAACAAATTCtgattgtgtgtgtaatttatgAACCAGCGAATGAGCCCACAATGAGGTTTAAGAGTAAGATAACCTCCCCCCCTTGTGTAAATGAATGGCCGTCTAAACTGCAGTGCTGTTGACTTTAGCGCCCTTATTTTGTAACTGAGAATCCTGTAGACGCTGCTTCTGTGTTCATGATGAAACCGAACTTATATTTCCGTTTACCCTGCCAAACTCTGTCGTGCATTATGAAACACCATCCAGCTTCTGACCAGATTGGAAGCAAGTCCTAGTCTTACCTTTACGCTGTTGTAGTTTTACGAAGACTGAATCTCCCGGCAACTCCGTTCACATGctcttcttttatttttctctATCTCTTCCTGTTTGCTTAAATGGGTTGGCTCCGAATAGCTTTACAAATTAGAACCTTGGTATCGTAACTGTGTACGaagcat

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004712 protein serine/threonine/tyrosine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-165 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in cytoplasm; nucleus; and plasma membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Orthologous to human TNK2 (tyrosine kinase non receptor 2).

Ensembl:

ensembl_id ENSDART00000160663

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033348 lncRNA downstream 610340 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1208989 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1312948 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033761 lncRNA downstream 1326121 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00033760 lncRNA downstream 1326135 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00031791 lncRNA upstream 25128 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00033763 lncRNA upstream 662215 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 675842 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 686977 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 686977 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031787 mRNA downstream 86748 4631335 ~ 4642407 (-) True XLOC_016103
TCONS_00031784 mRNA downstream 232797 4490604 ~ 4496358 (-) False XLOC_016101
TCONS_00031785 mRNA downstream 234916 4490824 ~ 4494239 (-) True XLOC_016101
TCONS_00031781 mRNA downstream 658305 4044636 ~ 4070850 (-) True XLOC_016099
TCONS_00031780 mRNA downstream 696423 4019538 ~ 4032732 (-) True XLOC_016098
TCONS_00031792 mRNA upstream 61703 4849269 ~ 4874966 (-) False XLOC_016106
TCONS_00031793 mRNA upstream 62147 4849713 ~ 4868002 (-) True XLOC_016106
TCONS_00031794 mRNA upstream 112647 4900213 ~ 5074812 (-) False XLOC_016107
TCONS_00031795 mRNA upstream 115948 4903514 ~ 5014939 (-) False XLOC_016107
TCONS_00031797 mRNA upstream 119808 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031786 other downstream 158052 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031783 other downstream 612755 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031782 other downstream 614939 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031770 other downstream 1326121 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031768 other downstream 1603081 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031796 other upstream 115994 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 120230 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031799 other upstream 155394 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031800 other upstream 252601 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031821 other upstream 767099 5554665 ~ 5561019 (-) False XLOC_016117

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00842413_00868623.mRNA True 3691 mRNA 0.52 15 CI01000003 842413 ~ 868663 (+)