RNA id: TCONS_00031791


Basic Information

Item Value
RNA id TCONS_00031791
length 402
lncRNA type lincRNA
GC content 0.44
exon number 2
gene id XLOC_016105
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4812694 ~ 4814272 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtccacactacgccaccaaaaacggaaatcacgtgaccattcgtgcactctgagcatgcgcgttctagtataaacagaaagcatgtgtctcgctcggcatttggttattgttagtcaacaaacgtcGGTTGTACATTAAACGCGATGActaagaaagcaagagaggtatttttgtggacagacgacgaggtcgagttgttactaaacgtaacaaatgaataactgcacaatggcgcctaaaacagacaacagtgcaaacaacactcccatttctgtgcccaagTTGTTTACAGTattgtcttccggtagcgttaaagccatgtgttatagtcatgtgataggggaaggatatgcaatgacacaaaagccagTATGCAATCAGGTggcgaatctcagcagtcc

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043005 neuron projection cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0097458 obsolete neuron part cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171510

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031790 lncRNA downstream 15182 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 693879 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1292528 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1396487 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033761 lncRNA downstream 1409660 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00033763 lncRNA upstream 635509 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 649136 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 660271 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 660271 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 743097 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031789 mRNA downstream 25118 4775848 ~ 4787576 (-) False XLOC_016104
TCONS_00031788 mRNA downstream 25128 4729155 ~ 4787566 (-) False XLOC_016104
TCONS_00031787 mRNA downstream 170287 4631335 ~ 4642407 (-) True XLOC_016103
TCONS_00031784 mRNA downstream 316336 4490604 ~ 4496358 (-) False XLOC_016101
TCONS_00031785 mRNA downstream 318455 4490824 ~ 4494239 (-) True XLOC_016101
TCONS_00031792 mRNA upstream 34997 4849269 ~ 4874966 (-) False XLOC_016106
TCONS_00031793 mRNA upstream 35441 4849713 ~ 4868002 (-) True XLOC_016106
TCONS_00031794 mRNA upstream 85941 4900213 ~ 5074812 (-) False XLOC_016107
TCONS_00031795 mRNA upstream 89242 4903514 ~ 5014939 (-) False XLOC_016107
TCONS_00031797 mRNA upstream 93102 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031786 other downstream 241591 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031783 other downstream 696294 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031782 other downstream 698478 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031770 other downstream 1409660 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031768 other downstream 1686620 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031796 other upstream 89288 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 93524 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031799 other upstream 128688 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031800 other upstream 225895 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031821 other upstream 740393 5554665 ~ 5561019 (-) False XLOC_016117

Expression Profile

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