RNA id: TCONS_00031793


Basic Information

Item Value
RNA id TCONS_00031793
length 2390
RNA type mRNA
GC content 0.49
exon number 17
gene id XLOC_016106
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4849269 ~ 4874966 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTTCCACAGATTTTTGAGGTCACAAATGGATCAAGCCAGGACAACCATCTCCAAAATCTTCAATGGGGAACCACGTTCCTACACGCGCTTTAACCTGACCCAGAACATGGAGGGCGACAACAGCCATGTGGAGATGAAGCTGTCGTCTGACATGGATGAAGAGGTGGAGGCGAACGGTGTTGGGGAAAACCAACGTAATGGTCAATATTACCCCAGCAAGCTGAACCAGCGCTCTCCCAAAACTGTCTGCGGATTCGTCGTTGGCATTCTGCTCCTCTTCCTTTTTGGATACCTCATTGGTTACATGTCTAATAAAAGCACAGGCAAAACTGAAATCAAGACAGATTGTCCGGTGTTTAGTGAGACGGCTCCGGTGAGACCAGAAATCGCTGTTTCGTTGGACTGGAGTGATCTCAGGGCATTGCTCAAAAGGAAACTGACAACTGAAAACATTAACAGCAACTTCAAGGAGTTTTCTAGTCTCAGTCACCAGGCGGGAAGCTCAGGTGATGAGATGCTGGCTAATAAAATCATGGGGAAATTCAAAACATTGGGAATGAACCCCTGGACCGATGAGCACTATGTGAAAGTCCACGATCCCGGTGCATCCAATAACAGAGTGCTCTTCCGTAACAATGTGGTGGGAACAACCGAGGGCTATCTGGCCTACAGTGCTATTAAAACAGTGCAGGGCGCAGCTCTGTATGCCCATTATGGACGGGCAGAGGATTTCAGACGCCTGCAAGAGGTCAGTGCTGATGTGAGTGAAAAGGTGGTCTTGGTCAGAGCTGGACTGCTCAGTTATGCTGAAAAGGTTGCGAATGCTGCTAGCTTGAATGCTAGTGCCGTGCTGATTTACCCAGATCCTGTTAACTACCAAATTAAAGAAAACACTGCTCTTTTTGGCCATGTCCATCTTGGCACTGGTGACCCTTACACTCCAGGTTTCCCTTCATTCAATCATACCCAGTTTCCACCAGCTCAGTCTTCCGGCTTGCCCAGCATCCCAGCACAAACCATCACCACCAAACAGGCTTCTGAGATCATGAGTAAGTTAGGTGGTCGAAGTTCCCCAAGAGAATGGAGTGATGGGATGCTCGCGGACACTCAGTACCTGCTCGGCGATAAAGATGACATCATCACAGTGGAAGTCAACAACGTCCTCGTTCAGAAAAAAATCCACAATGTGTTTGGAGTCATTAAAGGTTATTTGGATGCAGACCGCTATTTGGTGATCGGGGTCCAGAGAGATGCATGGGGTCCGGGATTTGCCCGAAGCACAGTTGGCACTAGTTTACTGGTGGAGTTGGCCAGAACTATCACAGACATGATCAAGAATGATGGATTCAAACCAAAGAGGAGCATCGTTTTTGCAAGCTGGAGTGCTGGTGAATTTGGAGGTGTCGGAGCCACAGAGTGGTTGGAGGGTTACCTGAATTCTTTGAATTTGAAGATGTTTTCTTACATCAGCCTCGATGACCTCATCTCAGGTTCGGACTCTTTCAAAGCTGCTGCCAGTCCACTGCTGTATGATTTACTGGAGAGCACAATGAAGCAGGTCTCATCTCCAACCGATTCAACCAAATCCTTGCATGAACAGTTTGCAGGATCCAACTGGGAGAAGTCTGTgATTGAGCCCATGGGTTTGTCTCACCCTTCCTATGCGTTCCAGACCTTCTCAGGCATCCCGTCACTGTCATTTCGATTTTTTACAAATTCAAGGTTTTACCCGTTTGGTACATTCGAGGATACCAACCAGAATCTAGATCTGTTCACGTCCCGCAAGACTTTGGTGCTGGCCAAGGCGGCCGGTGAGGTGGCAGGACTGGTCACTCTTCGGCTGGTGCATGACCACTTGCTCAAGCTCAACGTGGCAAAGTACACCACCATCATCCGCAGCTACGTGTCCCAGATCAGGTCTAAAGTTGAATCACGCCAAATGTCTGGCCGCCTTCCTCCAACGTTGACAATGCAGTGGCTTCTGTCAGCTCAGGGTTCATATGATCGTGCTGCGAGCGCTCTTACTTCTGCCATCCGAAACAGCGATCTTGATGACATGGAGCAGTGTCGCATCATCAACAATCGCATTATGAGGGTGGAAGGCAGTCTGCTCTCTCCATACGTGTCTCCCCGTCAGACTCTGTTCCGGCACATTCTGCTGGGCTCCGGCTCGCACACACTGGCAGCTCTGCTGGATCACCTCGAAGCCATTAAAGGAGGCCTGGAATCTGCTGACATCGACCAGTTCAAGAACCAGTTCGCTCTCGCCACCTGGACCATCCAGGGCTGTGCCAATGCGTTGGCAGGGGAAGTCTGGGATTTGGATAATCAAATTTAGCTTCAGCTCACCTCTTTAGGTTTACAACTGTTTTCCATCAGTCAAGACAA

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0033572 transferrin transport biological_process
GO:0006826 iron ion transport biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004998 transferrin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041220-1 Predicted to enable transferrin receptor activity. Acts upstream of or within cellular iron ion homeostasis; hemoglobin biosynthetic process; and hemopoiesis. Predicted to be located in melanosome and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in blood; blood island; intermediate cell mass of mesoderm; presumptive blood; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast carcinoma; immunodeficiency 46; multiple myeloma; and ovarian cancer. Orthologous to human TFRC (transferrin receptor).

Ensembl:

ensembl_id ENSDART00000189835

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 35441 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 52201 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 730898 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1329547 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1433506 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033763 lncRNA upstream 581779 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 595406 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 606541 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 606541 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 689367 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031789 mRNA downstream 62137 4775848 ~ 4787576 (-) False XLOC_016104
TCONS_00031788 mRNA downstream 62147 4729155 ~ 4787566 (-) False XLOC_016104
TCONS_00031787 mRNA downstream 207306 4631335 ~ 4642407 (-) True XLOC_016103
TCONS_00031784 mRNA downstream 353355 4490604 ~ 4496358 (-) False XLOC_016101
TCONS_00031794 mRNA upstream 32211 4900213 ~ 5074812 (-) False XLOC_016107
TCONS_00031795 mRNA upstream 35512 4903514 ~ 5014939 (-) False XLOC_016107
TCONS_00031797 mRNA upstream 39372 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031801 mRNA upstream 202916 5070918 ~ 5071888 (-) True XLOC_016107
TCONS_00031802 mRNA upstream 263962 5131964 ~ 5135125 (-) True XLOC_016108
TCONS_00031786 other downstream 278610 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031783 other downstream 733313 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031782 other downstream 735497 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031770 other downstream 1446679 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031768 other downstream 1723639 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031796 other upstream 35558 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 39794 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031799 other upstream 74958 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031800 other upstream 172165 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031821 other upstream 686663 5554665 ~ 5561019 (-) False XLOC_016117

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00731635_00742538.mRNA True 2774 mRNA 0.44 17 CI01000003 731200 ~ 742609 (+)