Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031795 |
| length | 2964 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 22 |
| gene id | XLOC_016107 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 4900213 ~ 5074812 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0099645 | neurotransmitter receptor localization to postsynaptic specialization membrane | biological_process |
| GO:0098609 | cell-cell adhesion | biological_process |
| GO:0007268 | chemical synaptic transmission | biological_process |
| GO:0097120 | receptor localization to synapse | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0045197 | establishment or maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0043113 | receptor clustering | biological_process |
| GO:0030866 | cortical actin cytoskeleton organization | biological_process |
| GO:0045930 | negative regulation of mitotic cell cycle | biological_process |
| GO:0001935 | endothelial cell proliferation | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0098839 | postsynaptic density membrane | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0031594 | neuromuscular junction | cellular_component |
| GO:0008328 | ionotropic glutamate receptor complex | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016323 | basolateral plasma membrane | cellular_component |
| GO:0019901 | protein kinase binding | molecular_function |
| GO:0019902 | phosphatase binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050222-3 | Predicted to enable phosphatase binding activity and protein kinase binding activity. Predicted to be involved in several processes, including actin cytoskeleton organization; negative regulation of G1/S transition of mitotic cell cycle; and protein localization to membrane. Predicted to be located in plasma membrane. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane. Is expressed in retina; spinal cord; and tegmentum. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human DLG1 (discs large MAGUK scaffold protein 1). |
| ensembl_id | ENSDART00000164506 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031791 | lncRNA | downstream | 89242 | 4812694 ~ 4814272 (-) | True | XLOC_016105 |
| TCONS_00031790 | lncRNA | downstream | 106002 | 4779100 ~ 4797512 (-) | True | XLOC_016104 |
| TCONS_00033348 | lncRNA | downstream | 784699 | 4114011 ~ 4118815 (-) | False | XLOC_016100 |
| TCONS_00033762 | lncRNA | downstream | 1383348 | 3519583 ~ 3520166 (-) | True | XLOC_016095 |
| TCONS_00031772 | lncRNA | downstream | 1487307 | 3412076 ~ 3416207 (-) | True | XLOC_016092 |
| TCONS_00033763 | lncRNA | upstream | 434842 | 5449781 ~ 5453522 (-) | True | XLOC_016113 |
| TCONS_00031813 | lncRNA | upstream | 448469 | 5463408 ~ 5466487 (-) | False | XLOC_016114 |
| TCONS_00031815 | lncRNA | upstream | 459604 | 5474543 ~ 5475702 (-) | False | XLOC_016114 |
| TCONS_00031816 | lncRNA | upstream | 459604 | 5474543 ~ 5475728 (-) | True | XLOC_016114 |
| TCONS_00031822 | lncRNA | upstream | 542430 | 5557369 ~ 5560827 (-) | False | XLOC_016117 |
| TCONS_00031792 | mRNA | downstream | 28548 | 4849269 ~ 4874966 (-) | False | XLOC_016106 |
| TCONS_00031793 | mRNA | downstream | 35512 | 4849713 ~ 4868002 (-) | True | XLOC_016106 |
| TCONS_00031789 | mRNA | downstream | 115938 | 4775848 ~ 4787576 (-) | False | XLOC_016104 |
| TCONS_00031788 | mRNA | downstream | 115948 | 4729155 ~ 4787566 (-) | False | XLOC_016104 |
| TCONS_00031787 | mRNA | downstream | 261107 | 4631335 ~ 4642407 (-) | True | XLOC_016103 |
| TCONS_00031801 | mRNA | upstream | 55979 | 5070918 ~ 5071888 (-) | True | XLOC_016107 |
| TCONS_00031802 | mRNA | upstream | 117025 | 5131964 ~ 5135125 (-) | True | XLOC_016108 |
| TCONS_00031803 | mRNA | upstream | 163233 | 5178172 ~ 5199431 (-) | True | XLOC_016109 |
| TCONS_00031804 | mRNA | upstream | 323820 | 5338759 ~ 5356686 (-) | True | XLOC_016110 |
| TCONS_00031805 | mRNA | upstream | 382125 | 5397064 ~ 5404466 (-) | False | XLOC_016111 |
| TCONS_00031786 | other | downstream | 332411 | 4571013 ~ 4571103 (-) | True | XLOC_016102 |
| TCONS_00031783 | other | downstream | 787114 | 4116314 ~ 4116400 (-) | True | XLOC_016100 |
| TCONS_00031782 | other | downstream | 789298 | 4114118 ~ 4114216 (-) | False | XLOC_016100 |
| TCONS_00031770 | other | downstream | 1500480 | 3387572 ~ 3403034 (-) | False | XLOC_016091 |
| TCONS_00031768 | other | downstream | 1777440 | 3125958 ~ 3126074 (-) | True | XLOC_016090 |
| TCONS_00031800 | other | upstream | 25228 | 5040167 ~ 5043850 (-) | False | XLOC_016107 |
| TCONS_00031821 | other | upstream | 539726 | 5554665 ~ 5561019 (-) | False | XLOC_016117 |
| TCONS_00031833 | other | upstream | 1027100 | 6042039 ~ 6045395 (-) | False | XLOC_016126 |
| TCONS_00031851 | other | upstream | 1751354 | 6766293 ~ 6766407 (-) | True | XLOC_016138 |
| TCONS_00031853 | other | upstream | 1893723 | 6908662 ~ 6908681 (-) | True | XLOC_016140 |
