RNA id: TCONS_00031800


Basic Information

Item Value
RNA id TCONS_00031800
length 890
RNA type processed_transcript
GC content 0.39
exon number 2
gene id XLOC_016107
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 4900213 ~ 5074812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAGATACTGAGAGATGTGGGGAATTGGTGAAAGTGCCCGATGCATTGCCTCCAGTCAACCTGTGGGACTTCTCCAGCATCCAAAGCACAACGGTGACTTCAGACACCCTGCCCAGCCTTAGCACCAGCATAGAGGACTCTCCCCTCCTAAATGAAATCCTTCATGTGCTTGCTAAAGCCAAATCTTCCTCCAGTGACCTGGACCAAGTAAGTATGATCCGGCACGCGTCTGGTGGGTTTGGGCATCCCCCATGGCCGCATGTCTGGGCCGCTCATTTTCTCCTGCCTTGTTCTCAAAACCTCATCGACGGGGTTTTTCCTCCAAGAATAGAGGGACTCATGTGTCATTGTGCTCTCCTGTTGGGTCTGCTGTCGACGCGGGTCACAGTGGGATGCTAAATTTCGGTGGCCAGTCTGTTTGTGACATTTTCACAATTTTGTTTTAAACTTTGGGATTAAATTTGAAAATCTTCTGCATTGGTCAGCTTTGTAGGAAATGTTTATAATTTAGTTGttaaaaataactgcaaaaaagttgaagtatttaatataattgtgaAAATGTCTGTGTAttgatatttaaatactttatctAAATACTGTattaggttttatttttatttagcagtATATTATCTTATATTGTACATAGTATGTGAATTTCACctcatgtctttttttaaatatatggtaGGTAAATATATGGACCCCAGGGGGGGTTATAATACAACTTTCTCcttgtttgtttttctattttggGAAGTCATAAACGTGTCTGCTTTACTGTTGGAGAAAATGGGGATACAAATATATATGATATAgaaatgtatgtatgcatttacattttattcatttaacacTTATATTcaataaaagcactttaaatcaCC

Function

GO:

id name namespace
GO:0099645 neurotransmitter receptor localization to postsynaptic specialization membrane biological_process
GO:0098609 cell-cell adhesion biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0097120 receptor localization to synapse biological_process
GO:0007015 actin filament organization biological_process
GO:0045197 establishment or maintenance of epithelial cell apical/basal polarity biological_process
GO:0043113 receptor clustering biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0009790 embryo development biological_process
GO:0098839 postsynaptic density membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0031594 neuromuscular junction cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0019902 phosphatase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050222-3 Predicted to enable phosphatase binding activity and protein kinase binding activity. Predicted to be involved in several processes, including actin cytoskeleton organization; negative regulation of G1/S transition of mitotic cell cycle; and protein localization to membrane. Predicted to be located in plasma membrane. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane. Is expressed in retina; spinal cord; and tegmentum. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human DLG1 (discs large MAGUK scaffold protein 1).

Ensembl:

ensembl_id ENSDART00000159633

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 225895 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 242655 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 921352 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1520001 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1623960 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033763 lncRNA upstream 405931 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 419558 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 430693 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 430693 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 513519 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031795 mRNA downstream 25228 4903514 ~ 5014939 (-) False XLOC_016107
TCONS_00031797 mRNA downstream 115142 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031792 mRNA downstream 165201 4849269 ~ 4874966 (-) False XLOC_016106
TCONS_00031793 mRNA downstream 172165 4849713 ~ 4868002 (-) True XLOC_016106
TCONS_00031789 mRNA downstream 252591 4775848 ~ 4787576 (-) False XLOC_016104
TCONS_00031801 mRNA upstream 27068 5070918 ~ 5071888 (-) True XLOC_016107
TCONS_00031802 mRNA upstream 88114 5131964 ~ 5135125 (-) True XLOC_016108
TCONS_00031803 mRNA upstream 134322 5178172 ~ 5199431 (-) True XLOC_016109
TCONS_00031804 mRNA upstream 294909 5338759 ~ 5356686 (-) True XLOC_016110
TCONS_00031805 mRNA upstream 353214 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031796 other downstream 25538 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 55763 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 115040 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 469064 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031783 other downstream 923767 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031821 other upstream 510815 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 998189 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1722443 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1864812 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3590390 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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