RNA id: TCONS_00031802


Basic Information

Item Value
RNA id TCONS_00031802
length 1034
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_016108
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5131964 ~ 5135125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAGAAAGCTTCATTACAATAGTGATTGTCGGGGGACACAGGCGGATTATTCTCGCATTTTCCTGCGCTCCAATTCTATTGATACACAACATTAATTATGGCAGATGCAAAGGTTGACTCCGCAACGGAAATCTCCGCAAAGGACCTGAAGGAGAAGAAGCTCATCGAGGAGAAGGAAAACGGAAAAGATGCTACTAATGGAAAGGAGAACGAGGAGAACGGAGAGCCAGAAATTGATGATGAAGATGACGATGAGGTAGATGAAGATGACGAAGAAGGAGAGGGTGATGAGGATGAGGacgaggatgatgatgatgaagacctAGGTGGAGGAACAAAGCGGGgtgctgatgatgatgaagatgaggatgaagatgatgagGATGACGTCGACCCCAAGAAGCAGAAGGTTAATTAAAAGGATTGTTTCATATTGCTGAGCAGGTGTAGATGCCTCTACTTCAACCCATCTGTTGGAGCCAGTGGCATAATGGACTCAAATACATAAAACATGGTCATTTTCAAGTTTGTCACCCATACCAACCAAACTGACCCCCAATTCAAAATTTTCTAGAGGACCGGCCACAACTTCGATTTCCAGCATTCACAATGAAATACGCAAGACAaggatttgtttgtatttttatttacattttatatttttgtacataTTGTGAAGAGATCAGCCACTTTATCATGATCTCCTGTGACCAAAACGGTGCTTCTTTAAGAAATTTTACTTGTTTGACCATGTCTCGATATTTCAACATAGACGacatatattaaatgaaaaaaaaaatcaacagccATCGAACTCAGAGCATTCCAGTAAATTTTATGTATGAACTTTAGTTGTACCATAACTAGTTGTACCATAAACTAGTTTTTTTGTATGGGAGGGCTAGGCCAAAGAAAAGGAGTTTTGGTTTCTTTCGATTTCGTTTTGTCTACATTATTTGTTTTACCTTGGCCTGTTTGTtgtatgtgtggagtttgttgtTCAACAATAaacttgacttttattttgtgaGTT

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8681 Acts upstream of or within apoptotic process. Located in nucleus. Is expressed in several structures, including central nervous system; fin; pleuroperitoneal region; sensory system; and tail bud. Orthologous to human PTMA (prothymosin alpha).

Ensembl:

ensembl_id ENSDART00000164039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 317692 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 334452 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1013149 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1611798 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1715757 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033763 lncRNA upstream 314656 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 328283 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 339418 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 339418 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 422244 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031794 mRNA downstream 57152 4900213 ~ 5074812 (-) False XLOC_016107
TCONS_00031801 mRNA downstream 60076 5070918 ~ 5071888 (-) True XLOC_016107
TCONS_00031795 mRNA downstream 117025 4903514 ~ 5014939 (-) False XLOC_016107
TCONS_00031797 mRNA downstream 206939 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031792 mRNA downstream 256998 4849269 ~ 4874966 (-) False XLOC_016106
TCONS_00031803 mRNA upstream 43047 5178172 ~ 5199431 (-) True XLOC_016109
TCONS_00031804 mRNA upstream 203634 5338759 ~ 5356686 (-) True XLOC_016110
TCONS_00031805 mRNA upstream 261939 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031806 mRNA upstream 261983 5397108 ~ 5399437 (-) True XLOC_016111
TCONS_00031807 mRNA upstream 275307 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031800 other downstream 88114 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 117335 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 147560 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 206837 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 560861 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 419540 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 906914 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1631168 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1773537 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3499115 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU25611 False 1100 lncRNA 0.39 5 CI01000003 570550 ~ 573928 (-)
mexican tetra (Astyanax mexicanus) TU25611 True 1057 lncRNA 0.44 2 NC_035899.1 14363650 ~ 14434325 (-)
mexican tetra (Astyanax mexicanus) TU201511 True 1947 lncRNA 0.39 6 NC_035913.1 1956181 ~ 1969835 (-)