RNA id: TCONS_00031806


Basic Information

Item Value
RNA id TCONS_00031806
length 2330
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_016111
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5397064 ~ 5404466 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtggttgagtcggccgatccggcggcttttcgcgcgagaacggcgcgggcacgaacggcgcgcgctcccgagaggcgcccgagacgcgaaaaagcgcgcacagcggcctcttgcggatccgTGAAagcaaaaaacgctcgaatacgtacctcccgggacgtaaatcgcggtccgcagaaatgtccgcggggctacgtttccacaatgagcccgggttgaatgtATCATTtgcacaatgcaactttaaaatacagtaacatacggcattactgtcctacagtaaaatacagttcatgttACAGTTAAATAATTTCGTAAACAGTGTGCAATTACATATTAACACAGCATAGCAGCACAAATTTGGTATAGTAATGGAGTACAGCCTAGTTCAAGTTTATTCAGTTAAAAATGTAACCTTATTTCTATCCTATGTCTGTTTCCAGCGTAATGTCAATATCACAGATAACCCCGACCCTCTTCCTAAGTGGCGCCGATGCGTCAATGAATCAAGCCCTTATGACCCGAAAAGGCATTACACTCATCGTGAACGTGACCCTGTCCCACACCTGCCCTGTCTACCCAGGCGTGGAGTGTATACGTGTGGCAGTGTCCGACCTTCCAAATGCTCGTCTGGGGGACCACTTTGACCACGTCTCCGCTCGAATTCACAACAACAGACCTGGAGGAACCCTAGTGCactgtgctgcaggaatgagccGCTCTCCTGCTGTTATAATGGCATATCTCATGAAGTACAAAGGAGTGACTCTGAGACAGGCGCACAAGTGGGTTAAAGACAGCAGACCATACATTCGCCTTAATGTAGGATTCTGGACCCAGCTTCTGGATTACGAGAGGAAACTCTACGGTAGGAATACTGTGAGAGTGGCTGAACCCGTGGATGCACAGCCAACGCCACAAACACCAAAACTACCCTCCAGGTATAAAATGAGACAGTGTCCTCCGTCTCCAAGAGCGAGCCAACTCAGAAGATTCACCTCCTTTTCATCCTAACCAATGTTTGCAAACTGAGGTCAtgaaatatgttgcatgtacatggATAACTTCTTTCTACGCCATCACTTTGGATTGGAATCAGTAAGACTTATGAAGTGAAACGAACCAAATAGGCACGTTTTGTTTTACCCCTAGCTtttatcttgtgtgtgtgtgtgtgtgtgtatgtttattaatgtaattcTCTTCGTTGGGTGGATAAAACGATGATAATTCATTTCATATTCTGATAACAATatccactcactggccactttattaggtacaccttattagtaccggtttgaacccccttttgccttcagaactgccttaatcctttgtggcatagattcaacagggtgctggaaatattcctcagagattttggtccatattgtcatgataatatcacgcagttgctgcagatttgtcggctgcacatccatgatgttaaTCTCCAGTtcgaccacatcccaaagatgctctgtTTGATTGAGACCTggtcactgtggaggccatttgagtacagtgaagttattgtcatgttcaaaaaaccagtctgagatgatttgcgctagGAAGTAGCCGTCAGGAGATGGGTACACtatagtcataaagggatggacatggtcagcaactattcttaggtaggctgtggcgttgcaacaatactcaattggtactaatgggcccaaacaGTGCCAAgactattacaccaccagcctgaaacatTAATAcatggcaggatggatccatgctttcatgttgttgagttcaaattctgaccctaccatccaaatgttgcagcagaaatcgagactcatcagaccaggcaaagtttttccaatcttctattgtccaattttggtgagcctgtgcgaattgtagcctcagtttccaggagtggtacccggtgtggtcttctgctgctgtagctcatccaccTCAAGGCTCatcatgttgtgcgttcagagaagctcatcaagtggttatttgagttactcgaaccagtctggccattctcttctgacatcaacaaggcatttgcgcccacagaactgccgctcactggatattttctgtttttcggaccattccctgtaaaccctatagaaggttgtgcgtgaaaatcccagtaggtcagcagtttctgaaatactcagaccagcccgtctggcaccaacaaccatgccacgttcaaagtcacttaaatcacctttcttacccattctgatgctcggtgtttatcagtgtacctaataaagtggccgcaaCTTTTCTGTCAATTCAATCAATTAATAGCTTACAAACATTGACCACATGAAAAGGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-32 Predicted to enable MAP kinase tyrosine/serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Is expressed in several structures, including forerunner cell group; lens placode; nervous system; optic vesicle; and paraxial mesoderm.

Ensembl:

ensembl_id ENSDART00000132411

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 582836 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 599596 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1278293 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1876942 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1980901 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033763 lncRNA upstream 50344 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 63971 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 75106 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 75106 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 157932 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031804 mRNA downstream 40422 5338759 ~ 5356686 (-) True XLOC_016110
TCONS_00031803 mRNA downstream 197677 5178172 ~ 5199431 (-) True XLOC_016109
TCONS_00031802 mRNA downstream 261983 5131964 ~ 5135125 (-) True XLOC_016108
TCONS_00031801 mRNA downstream 325220 5070918 ~ 5071888 (-) True XLOC_016107
TCONS_00031797 mRNA downstream 472083 4907374 ~ 4925025 (-) False XLOC_016107
TCONS_00031807 mRNA upstream 10995 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031808 mRNA upstream 11433 5410870 ~ 5443681 (-) False XLOC_016112
TCONS_00031809 mRNA upstream 35511 5434948 ~ 5443672 (-) True XLOC_016112
TCONS_00031810 mRNA upstream 57104 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031811 mRNA upstream 57104 5456541 ~ 5475910 (-) False XLOC_016114
TCONS_00031800 other downstream 353258 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 382479 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 412704 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 471981 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 826005 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 155228 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 642602 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1366856 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1509225 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3234803 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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