RNA id: TCONS_00031808


Basic Information

Item Value
RNA id TCONS_00031808
length 4202
RNA type mRNA
GC content 0.53
exon number 22
gene id XLOC_016112
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5410432 ~ 5443745 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCGGAGTTCACAGCAACAAGATGAGAGAGGAAGCCTTGAGATGGAGGCAGGGGGGTGATTTATCGTAAAAAAATAGCGAATTTGGAGACAGTTGACATTCCGTTTTCAGAAAGAGATGTAAAAGTCTCCCCAAGGAAGAGTCGTGTGTTAAATTTAGCTATATTAATACTCAGTCAGCACTGGATATTTGGGTGAGTTCCTCAAGTATTGACCGGGCGCCATTTAAACACGCTGTGCGGGAGACAGGAAAGAAATAACCGCTCTCACAGCCCGCACTCGGCTTTCTGCTTCCGCGGACAGATTCTGCTCTCTAATAAACACACTTATTTGTTAGGAGATTGTATTCTCAGTGTGGTAGGCAGTAGAAATGTGGCCTGTTTGTGAAGGCCTCTGGTAGCACCAGGTATTGTGTGTGTTAGCTGGCTAACGGCTAACAGACCTCGAACTGAAGAGAGTTACGACCCCGAGCAAGAGACTACAGGTGTACTAAACCGTGACCATGGCGACTGACATCGGCTCCCCTCCGCGGTTCTTCCATATGCCTCGCTTCCAGCACCAGGCTCCCCGTCAGCTGTTCTACAAGAGGCCCGACTTCGCCCAGCAGCAGGCCATGCAGCAGCTCACCTTCGACGGCAAGCGCATGAGAAAAGCCGTCAACCGCAAAACCATCGATTACAATCCATCCGTCATCAGACATCTAGAGAATCGATTGTGGCAGCGAGATCATCGAGATTTCCGTGCTGTTCAACCAGACGCAGGCTGCTATAATGAACTCGTTCCCCCAGTGGGCATGATTAGCAATCCTATGAATGCTGTCACGACAAAGTTTGTCAGAACCTCCACCAACAAAGTCAAATGCCCTGTGTTTGTTGTGAGGTGGACTCCTGAAGGCAGGCGACTTGTAACAGGTGCCTCCAGTGGGGAGTTTACTTTATGGAATGGGCTCACGTTCAACTTTGAGACAATTTTACAGGCTCATGACAGCCCTGTCAGGGCAATGACCTGGTCTCATAATGACATGTGGATGTTAACTGCCGACCATGGAGGTTATGTGAAGTACTGGCAGTCCAACATGAATAACGTCAAGATGTTCCAGGCTCACAAGGAGGCGATTAGAGAGGCCAGTTTCTCTCCTACGGATAATAAATTTGCCACTTGCTCTGATGACGGAACTGTTCGCATCTGGGACTTTCTGCGCTGTCACGAGGAAAGAATCCTGAGAGGTCATGGAGCAGATGTGAAGTGTGTGGACTGGCATCCCACAAAGGGCTTGGTGGTGTCCGGCAGCAAAGACAGCCAGCAGCCCATCAAATTTTGGGACCCAAAGACTGGACAAAGCTTGGCAACACTacatGCACATAAAAACACAGTCATGGAGGTGAAGTGGAACCTCAATGGCAACTGGCTGTTGACAGCATCACGAGACCATTTATGCAAACTGTTTGACATCCGCAACCTCAAAGAGGAGCTGCAGGTTTTCAGAGGACACAAGAAAGAAGCCACAGCTGTGGCCTGGCACCCAGTTCACGAAGGCATGTTTGCCAGTGGAGGTTCTGATGGATCACTACTGTTTTGGCATGTTGGtGTGGAGAAAGAGGTTGGAGGAATGGAGATGGCACATGAAGGAATGATCTGGAGTTTAGCCTGGCATCCGCTGGGCCACATTTTGTGTTCTGGGTCTAACGATCACACAAGCAAATTTTGGACGAGGAATCGGCCTGGGGACAAGATGCGGGACAGATACAATCTAAATTTGTTGCCTGGAATGTCAGAAGATGGGGTGGAGTATGATGACATGGACACCAATAGTATTGCAGCCATTCCTGGCATGGGGATCCCAGAACAACTGAAGGCAGCCATGGAACAAGAACAATCAGGGAAAGACATGGTGGCAGAGCCTGAGATGAGCATCCCGGGGCTGGACTGGGGCATGGAAGAGGTCATGCTGAGGGACCAAAAAAAGGCCCCGACTAAAAAAGTTCCTTATGCAAAACCCATTCCAGCTCAGTTCCAACAGGCCTGGGCAGAGAATAAGGTTCCGGTGATGCCTGCTGGAGAAGTTCCAAAGGAAAGGAAGGATGAGAAGAAAGTAGATAGCAAGAAGAAGACGCAAGCAGAGATTGAGCAGGAAATGGCTGCCCTGCAGTATACAAACCCAATGCTGCTCGAGCAACTGAAGATTGAGCGAATGGCACAGTTGCAGGAGCAGGGACTTCCTCCCCCTACTGGACAGCAGTCAGGACCAGTTCCGTCCTTTCCAGGGCAAGGTGGTCCAATGCCTCCTCCAGCACAAGGCTTCCCTCAGTCCATGCCTCCACAGCAAACACCACACAACATGCCTCCTGTTGGACCAGGGGGGATGCCTGGTCCATTCATACCTTCAGGCCAAATGGGCCCACCGGGACCTCCCATGCACCAGGGTCCGCCTCCACAGGGCATGATGGGACCTCCAGACATGCATGGACCTCCACGTCATCCCGGCCCTCACAGGAACATTGGACCCCAGGGTCCTCCTGGCATGCCGCCAGGCCCCAGAGGCATGCAAGGACCTCCCCCAGGAGGGATGCACCCTGGCTCTGGTGGACCTCCAGGCAGTATTATGGGACCACCGCCACGAGGACAGGGTCCTCCACAAGGAAATATGATGCATCAGGACATGAGGGGGCCTGTGCCCCATGGAAACATGATGGGCCCTCAGGGACCCATGCAAGGGGGTATGATGGGCCCTCCGCTCAGGACTCATGGCATGGGAAATATGCATGGGATGGGACCTCCTCCTGGGGGTATGCATGGACCACCAAACAACATGCAAGGGCCACCAGGAAATATACAAGGACCTCAAAGCAGCATGCAGGGCCCCCCACCATATATGCAGGGCAAACCCCCACACATGGGTGATGGAAATCGAGGACAGTTCAGCCAGGGTCAGAATCAGCCAATCATGCATGGAATAGGACAGCAGGGTCCTAACGGAAAAGATGGTTCACGAGGGCCACCTAACCACCACATGGCTCACCCACCAGAGCGACAAGGCCCCGGAGGACCTAGTCAGAGCTCAGACGGAGGCCAGTACTGGGGGGAAGATGGGGGTTACCAAGAGGGCTGGAGAAGAGGCCCTGGAGGTCCTGCACAGGAATACTCTGGAGGTCACAGAGGAAACTCTGGAGGCCAGTGGGAAGGCCAGGAAAGGTTTTCCACACGTGATGAAGAGTTCATGGGGTATGATGGGTACGAGGGCTCTGGAGAGGAGTTTGAACAGAGGTCGAGACGACAACCCCATGGAGATGACTCATACCGGAGAGGTGGCCCAAATGTGCGTGGTGGGATGGGGGGCTACCAAGATGAGTATGGTGGAGATGAGAACTTTGACTCCCAAGAAGAGATGGGCCAAGGTTGGGGAGGAAGAGGGAGACCGCGTGGTGGACCAACAAGAGGAGGTCATGAGGGTTATCGGGATGGTCAGCGGCCAGACCACAACATGCATGACAGTCCTTCCCCTGCCAGTAGAGAGCGTTCGTCTTCTCTACAGGGCATGGATATGGCCTCACTGCCTCCACGCAAACGCCCATGGCATGATGGCCCAGGCACTGGCGACATGGACTCTCCTGGTTCAGGACCTGATGAAAGAGGAGCTGGTCGACCAACCCCAAGAGATGAAGGTGGGTACGGGCCTCCACAACGAGGCGGGGGAAGAGGTGGTTGGGGTCGTGGTGGGCTGCCTAACCCTGGTGGCCCCGGTTCCAATATGGGTCCTAATCTCAGACGAGGTGCTCCACGGGGTGCTATGAGGGGCGGTCGTGGGCGGTAGAAACAGTGATACCTGCTTTCCTGCTCACAAGAAGGTGAAACCGAGTACACTGAGGACAGAGCACAACAAAGAACCACACACGGCAAGAACACCAGCTTCCTTGAAGGTCTTAAATGGTGACTGGAAGCAGCACTTCAAAGGAAAATCAGCTTCTCAGACTGGTGGCTAAAGTTGAGCTTTTTCTCTACAATGTACTGGATGGAAGGTGAAGCGGTCATCCTAGGCCAGACGCTTTTGGCTCTGATGCTCCTTGGCACCTGCTTGGCCCATACATGGTGGTATACAGAACTTGATATCAACGATGAGAATAATAGCTGTAATGGTGCGATGAGAAACATCATCTCTTGAAATGGACTTGTGTTTGTGGTCCAGTAGACTTTGCGATGCATGC

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040924-3 Predicted to be involved in mRNA polyadenylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human WDR33 (WD repeat domain 33).

Ensembl:

ensembl_id ENSDART00000025131

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 596598 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 613358 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1292055 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1890704 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 1994663 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033763 lncRNA upstream 6100 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031813 lncRNA upstream 19727 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 30862 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 30862 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 113688 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031805 mRNA downstream 6404 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031806 mRNA downstream 11433 5397108 ~ 5399437 (-) True XLOC_016111
TCONS_00031804 mRNA downstream 54184 5338759 ~ 5356686 (-) True XLOC_016110
TCONS_00031803 mRNA downstream 211439 5178172 ~ 5199431 (-) True XLOC_016109
TCONS_00031802 mRNA downstream 275745 5131964 ~ 5135125 (-) True XLOC_016108
TCONS_00031810 mRNA upstream 12860 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031811 mRNA upstream 12860 5456541 ~ 5475910 (-) False XLOC_016114
TCONS_00031812 mRNA upstream 13707 5457388 ~ 5475921 (-) False XLOC_016114
TCONS_00031814 mRNA upstream 24204 5467885 ~ 5475921 (-) False XLOC_016114
TCONS_00031817 mRNA upstream 36444 5480125 ~ 5505094 (-) False XLOC_016115
TCONS_00031800 other downstream 367020 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 396241 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 426466 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 485743 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 839767 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 110984 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 598358 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1322612 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1464981 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3190559 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00390997_00406970.mRNA False 4937 mRNA 0.50 23 CI01000003 390897 ~ 408312 (+)
bowfin (Amia calva) AMCG00009522 True 3300 mRNA 0.43 7 CM030126.1 40052151 ~ 40068249 (-)