RNA id: TCONS_00033763


Basic Information

Item Value
RNA id TCONS_00033763
length 2539
lncRNA type antisense_over
GC content 0.33
exon number 4
gene id XLOC_016113
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5449781 ~ 5453522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTATTTGATGTCTTTATTGGGCATAACCCAAAAGAATAATAAACTCAACACAACTTAAACGGGTAACTCTTTACAATACAGAACATGTAGTTAATAATGCTAGTAAACAAAGGAAGATCTTCGTGAatgtttagtttaaacagtttctAACCTGACACCATCAGCACACAGCAAAGCATACAATCATCCCAGAAAACAGCATGCCTATTAGTGCCCTCCATACCTGAGGATGGATACAACACAATTCATATCTAAAACAAcatcatatacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtaaacatttatattgcatagaaaaaatgttgaaaataaagacaaaaaaataaatgttcttaAGGATTTTCTTGGGTTGCGCTTGTCTAAAAAGTACTgacaattttataaaatatttaatgaacatatgAAATCATTATATTAACTGTTTAAATGACGCATTACACCATCATCCTATCAACATAAGACACAACAAGCTTACAGTGACAAGCAATTGGGCTGTCTGCACCAAACGCAATGCTACGGAGCCCCTTAAGTGACATGTGGAAGAAATACTACTGATGAAGACTTTCACATTTGCACGACATCGACATATATATCACATGTGCACAACATATATATCCAGTGTGAACAACATAGACATACATATCGCATGTATATGACATAAACATACATATCGAGTGTGCACAACATACGTATCGCATGTGAACGACATATGTGACATAGATCTgcatgacatacagttgaagacagaattaattatttttatatatattttcccaaatgatgtttaacaaagcaaagaaatgatcacagtatgtctgataatattttttcttctggagaaagtcttacttgttttatttcggctagaataaaagcagttttacattttttttataaacattttaaggacaaaattatttgctcctttaagatattttttctttgatagtctacagaacaaaccatcattacacattaacttgtctaattaccctaatctgcctagttaacctaattaacctagttaagtctttaaatttcactttaagctgtatagaagtgtcttgaaaaacatctagtcaaatattatttactgtcatcatcgcaaagataaaataaatcagttactagaaaagtttttaaaactattatgtttagaaatgtgttgaaaccaTCTTCTCTCCACTaaacaaaaattgaaaaaaaaaaaaaaaaacaggggggctaataattctgacttatataaGTATAGTTTACACACAACGTAGACATATATATCGTGTGGGCACGACATACGTATAGCGTGCGTACAAcatagacATATATATCGCGTGCACGATATACACACAGCGTGCGCACAACATAGACATATATATCACATGTGCACTACATACGTATAGCATGCGCACaacatagacatatatatatatatatatatatatatatatatatatcacgtGTGCACGATATACACACAGCGTGCGCACAACATAGACATATATATCACATGTGCACTACAAACGTATAGCATGCGCACaacatagacatatatatatatatatcgcgtGTGCACGACATACGTATAGCATGCGCACaacatagacatatatatatatatatcgcgtGTGCACGACATGCATATAGCGTGCGCACAACATAGACATATATGTCGCGTGTGCACGACATACGCATTGCATCCGCATGACATAGACATATACTGTGTGTGCACCACATACGGATTGCTTCATATGACATAGACATACCTATTGTGTGCATATGACATGGACATACATATTGCGTGTGCACGACATCACGTGAGCACGCTAACGTCTTCAATATTTTTTCCCCACATGTCACTTTAGGAACTCCTTATGATGCGacacaacagaaacatttaaatacagacaTTGTGTGCACATTGTGAGTCACTTTCTGAATTTTGTTTTCGAACCGTTTATTTTCAATATCTGAGGTGTGTCTGCTGCCGTTTTCAGACGTATGGACATAAATGTCACTTATAAtggtattcaaactcacattggtagcatttaacactggaTAAAGCATATAgtctgtacctgaggtgatcattggcATAGTAGTTTATGCCATTGTTTTGCTGTGACTTTGTGGAAATAGAAACTAAAATGGTCATTTCTCTTTATCCTGTGTGTAGTTAGGACTTGGTGTTATTCTATTCTGTgaaaatatttttgcagttttgaggTTCTCTAGGTTTGTTAAAGGGACTCGTCTCCATCAGAAAAACTGCAGTCTATTTAGCAGAAAACAACATAATTAAGgtaaaaaagcactttaaaaagCCATTTAAGTTTTCAAAAATGGCAATAAATACAACAACTTGAGGATGACAATATAAGGCACGTATCCTAATTTAAAGGAATTCATACTCATAGCTGCATCTAAGCTCTTAATTTTCATCAAGCATTATATTAACAGGTCTAGCCATA

Function

GO:

id name namespace
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0009888 tissue development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071711 basement membrane organization biological_process
GO:0061061 muscle structure development biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0016049 cell growth biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005604 basement membrane cellular_component
GO:0031430 M band cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031791 lncRNA downstream 635509 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 652269 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1330966 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1929615 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031772 lncRNA downstream 2033574 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00031813 lncRNA upstream 9886 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031815 lncRNA upstream 21021 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 21021 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 103847 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00033349 lncRNA upstream 247576 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031807 mRNA downstream 6036 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031808 mRNA downstream 6100 5410870 ~ 5443681 (-) False XLOC_016112
TCONS_00031809 mRNA downstream 6109 5434948 ~ 5443672 (-) True XLOC_016112
TCONS_00031805 mRNA downstream 45315 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031806 mRNA downstream 50344 5397108 ~ 5399437 (-) True XLOC_016111
TCONS_00031810 mRNA upstream 3019 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031811 mRNA upstream 3019 5456541 ~ 5475910 (-) False XLOC_016114
TCONS_00031812 mRNA upstream 3866 5457388 ~ 5475921 (-) False XLOC_016114
TCONS_00031814 mRNA upstream 14363 5467885 ~ 5475921 (-) False XLOC_016114
TCONS_00031817 mRNA upstream 26603 5480125 ~ 5505094 (-) False XLOC_016115
TCONS_00031800 other downstream 405931 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 435152 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 465377 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 524654 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 878678 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 101143 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 588517 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1312771 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1455140 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3180718 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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