RNA id: TCONS_00031813


Basic Information

Item Value
RNA id TCONS_00031813
length 552
lncRNA type retained_intron
GC content 0.45
exon number 5
gene id XLOC_016114
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5456541 ~ 5475921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTTTGTGCTTTGCTGTCCTGTCGGATTAAGCTGGGACATTTAAAATCCTTATTTCTTCTTCCTGTATCTACTAATGTAGTTCTCATTTGAGGAAAAATCTGGCCTTTAAAGTACCGCGTTCATATTGGGGAGCACGGGTCTGTTGCCATAATGAGGAGTCTTTTCTTCTGTGCCTTAACTCTGGTTGTTTTTTGTTCTGATGGGGCTCTTTGCAAGTCAGTATTTTCTAGCAGCCCAAACGCACATATGCTGCTCCGTTCAAGAAGAGCCAACACTTTCATGGAGGAACTCAAGCCGGCATCGCTGGAGCGGGAGTGCAGAGAGGAACTGTGCGATTTCGAAGAAGCAAGAGAAATCTTTATAACAAGGGAGGCCACGCTGGAATTCTGGACGGCATATAAAGATGGAAACCAGTGCACCACAAATCCGTGTGTTCATGGCAAGTGTGTTGACCTGTTGCAGGATTTCTCCTGCACCTGCGACTCCGGATTTGAAGGGAAACATTGTGACCTGCGTGAGCATTTTTACGTGTTATTCACTTTACatatt

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060824-5 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within blood coagulation and proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including antiphospholipid syndrome; artery disease (multiple); placental abruption; thrombophilia (multiple); and toxic shock syndrome. Orthologous to human PROC (protein C, inactivator of coagulation factors Va and VIIIa).

Ensembl:

ensembl_id ENSDART00000145128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033763 lncRNA downstream 9886 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031791 lncRNA downstream 649136 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 665896 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1344593 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00033762 lncRNA downstream 1943242 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00031815 lncRNA upstream 8056 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031816 lncRNA upstream 8056 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031822 lncRNA upstream 90882 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00033349 lncRNA upstream 234611 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00033764 lncRNA upstream 260251 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031807 mRNA downstream 19663 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031808 mRNA downstream 19727 5410870 ~ 5443681 (-) False XLOC_016112
TCONS_00031809 mRNA downstream 19736 5434948 ~ 5443672 (-) True XLOC_016112
TCONS_00031805 mRNA downstream 58942 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031806 mRNA downstream 63971 5397108 ~ 5399437 (-) True XLOC_016111
TCONS_00031814 mRNA upstream 1398 5467885 ~ 5475921 (-) False XLOC_016114
TCONS_00031817 mRNA upstream 13638 5480125 ~ 5505094 (-) False XLOC_016115
TCONS_00031818 mRNA upstream 15664 5482151 ~ 5502256 (-) True XLOC_016115
TCONS_00031819 mRNA upstream 42055 5508542 ~ 5517438 (-) True XLOC_016116
TCONS_00031820 mRNA upstream 77414 5543901 ~ 5561005 (-) False XLOC_016117
TCONS_00031800 other downstream 419558 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 448779 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 479004 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 538281 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 892305 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 88178 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 575552 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1299806 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1442175 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3167753 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

//