RNA id: TCONS_00031814


Basic Information

Item Value
RNA id TCONS_00031814
length 1728
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_016114
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5456541 ~ 5475921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACTTTAAACAACAATCTTCATTTCATTTCCTttcttatttaaaacaaaaatTTCTCATTTGAGGAAAAATCTGGCCTTTAAAGTACCACGTTCATATTGGGGAGCACGGGTCTGTTGCCATAATGAGGAGTCTTTTCTTCTGTGCCTTAACTCTGGTTGTTTTTTGTTCTGATGGGGCTCTTTGCAAGTCAGTATTTTCTAGCAGCCCAAACGCACATATGCTGCTCCGTTCAAGAAGAGCCAACACTTTCATGGAGGAACTCAAGCCGGCATCGCTGGAGCGGGAGTGCAGAGAGGAACTGTGCGATTTCGAAGAAGCAAGAGAAATCTTTATAACAAGGGAGGCCACGCTGGAATTCTGGACGGCATATAAAGATGGAAACCAGTGCACCACAAATCCGTGTGTTCATGGCAAGTGTGTTGACCTGTTGCAGGATTTCTCCTGCACCTGCGACTCTGGATTTGAAGGGAAACATTGTGACCTCCGCAGGACAGCCACTAACTGTTCGCTGAACAACGGGGATTGTGATCATGATTGCCACGAGAGTAAGGACGGTCTTGCTCGCACATGCAGTTGCATCAAGGGATACCAACTTCAAGACAATTCTAGAAAATGTACTCCTAAAAATGATGCTTCATGTGGTCAGATTCGGATCCAAAAGTCAGCCTATTTACAGCCATGTGGTTTTGCATATAGAGTTGGCAAAAGGGGAAAGAGCCCCTGGCAgGCTCTTATACTAAATAATTTGGGCAGGTTTCATTGTGGTGGAGTTCTGATTGACGAAAACTGGGTTCTCACTGCCGCTCACTGCCTAGAGACGAGTTCCAAGTTCAGTGTCAGACTGGGCGACTACCAAAGGTTCAGGTTTGAAGGCTCCGAGATCACCCTTCCTGTCAAACAACACATCTCTCACCCACAATACAACCCAATCACAGTGGACAATGACATTGCTCTGCTGCGCTTGGAGGTTCCGGCCAAATTTTCCACGTACATTCTTCCGGCGTGCCTCCCCAGCCTGGAGCTGGCAGAACGAATGTTACATCGCAACGGGACGGTAACCGTCATCACAGGTTGGGGAAAGGACAACCAATCGGCCACCAGCTACAATTCTATGCTTAACTACGTGGAACTACCGATTGTTGACAACAAAGAGTGTTCCCGGCATATGATGAACAACCTATCTGAcaacatgctctgcgctggagtttTGGGGCAGGTCAAAGATGCATGTGAGGTGGACAGCGGGGGTCCGATGATGACGCTGTTTCACCATACGTGGTTTCTGGTGGGTTTGGTGTCCTGGGGAGAAGGCTGCGGGCAGAGAGACAAACTGGGCATCTACACCAAAGTGGCCAGCTATCTGGATTGGATAGATAGTGTCCGTCAGGGGTGGGATAAGGTTTAGACGCCTGACATTCTACCCCGAAATAGATccagttgaagttaaaatgattagctctcctgtaaattaaaaaatataaatatttcccaaataatgtttactagagcaaggagtttttcacagtatgtctgatcatattttttcttctggagaaagtcttgtgaatgaaatattgttttatttcggcaagaacaATCGCAGTTTTTaaggtttttaaaaccattttaaggtcttttttttttgattgtctacaaaacaaaccactgctatacaatgacttgctcaATACACTTACTcatttaattaacctagttaagccttt

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060824-5 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within blood coagulation and proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including antiphospholipid syndrome; artery disease (multiple); placental abruption; thrombophilia (multiple); and toxic shock syndrome. Orthologous to human PROC (protein C, inactivator of coagulation factors Va and VIIIa).

Ensembl:

ensembl_id ENSDART00000132496

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031813 lncRNA downstream 1398 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00033763 lncRNA downstream 14363 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031791 lncRNA downstream 653613 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 670373 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1349070 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031822 lncRNA upstream 81448 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00033349 lncRNA upstream 225177 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00033764 lncRNA upstream 250817 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031828 lncRNA upstream 362975 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00031832 lncRNA upstream 553660 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031810 mRNA downstream 1177 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031807 mRNA downstream 24140 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031808 mRNA downstream 24204 5410870 ~ 5443681 (-) False XLOC_016112
TCONS_00031809 mRNA downstream 24213 5434948 ~ 5443672 (-) True XLOC_016112
TCONS_00031805 mRNA downstream 63419 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031817 mRNA upstream 4204 5480125 ~ 5505094 (-) False XLOC_016115
TCONS_00031818 mRNA upstream 6230 5482151 ~ 5502256 (-) True XLOC_016115
TCONS_00031819 mRNA upstream 32621 5508542 ~ 5517438 (-) True XLOC_016116
TCONS_00031820 mRNA upstream 67980 5543901 ~ 5561005 (-) False XLOC_016117
TCONS_00031823 mRNA upstream 83896 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031800 other downstream 424035 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 453256 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 483481 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 542758 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 896782 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 78744 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 566118 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1290372 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1432741 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3158319 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

//