RNA id: TCONS_00031815


Basic Information

Item Value
RNA id TCONS_00031815
length 554
lncRNA type retained_intron
GC content 0.45
exon number 5
gene id XLOC_016114
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5456541 ~ 5475921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCTGTTTGTGCTTTGCTGTCCTGTCGGATTAAGCTGAGACATTTAAAATCCTTATTTCTGCTTCATGTATCTTCAAATGTAGTTCTCATTTGAGGAAAAATCTGGCCTTTAAAGTACCACGTTCATATTGGGGAGCACGGGTCTGTTGCCATAATGAGGAGTCTTTTCTTCTGTGCCTTAACTCTGGTTGTTTTTTGTTCTGATGGGGCTCTTTGCAAGTCAGTATTTTCTAGCAGCCCAAACGCACATATGCTGCTCCGTTCAAGAAGAGCCAACACTTTCATGGAGGAACTCAAGCCGGCATCGCTGGAGCGGGAGTGCAGAGAGGAACTGTGCGATTTCGAAGAAGCAAGAGAAATCTTTATAACAAGGGAGGCCACGCTGGAATTCTGGACGGCATATAAAGATGGAAACCAGTGCACCACAAATCCGTGTGTTCATGGCAAGTGTGTTGACCTGTTGCAGGATTTCTCCTGCACCTGCGACTCTGGATTTGAAGGGAAACATTGTGACCTCCGGGAGCATTTTTATGTGTTATTCACTTtacatatt

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060824-5 Predicted to enable calcium ion binding activity and serine-type endopeptidase activity. Predicted to act upstream of or within blood coagulation and proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in several diseases, including antiphospholipid syndrome; artery disease (multiple); placental abruption; thrombophilia (multiple); and toxic shock syndrome. Orthologous to human PROC (protein C, inactivator of coagulation factors Va and VIIIa).

Ensembl:

ensembl_id ENSDART00000146954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031813 lncRNA downstream 8056 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00033763 lncRNA downstream 21021 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031791 lncRNA downstream 660271 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031790 lncRNA downstream 677031 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00033348 lncRNA downstream 1355728 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031822 lncRNA upstream 81667 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00033349 lncRNA upstream 225396 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00033764 lncRNA upstream 251036 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031828 lncRNA upstream 363194 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00031832 lncRNA upstream 553879 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031810 mRNA downstream 7835 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031807 mRNA downstream 30798 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031808 mRNA downstream 30862 5410870 ~ 5443681 (-) False XLOC_016112
TCONS_00031809 mRNA downstream 30871 5434948 ~ 5443672 (-) True XLOC_016112
TCONS_00031805 mRNA downstream 70077 5397064 ~ 5404466 (-) False XLOC_016111
TCONS_00031817 mRNA upstream 4423 5480125 ~ 5505094 (-) False XLOC_016115
TCONS_00031818 mRNA upstream 6449 5482151 ~ 5502256 (-) True XLOC_016115
TCONS_00031819 mRNA upstream 32840 5508542 ~ 5517438 (-) True XLOC_016116
TCONS_00031820 mRNA upstream 68199 5543901 ~ 5561005 (-) False XLOC_016117
TCONS_00031823 mRNA upstream 84115 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031800 other downstream 430693 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 459914 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 490139 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 549416 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 903440 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 78963 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 566337 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1290591 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1432960 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3158538 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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