RNA id: TCONS_00031817


Basic Information

Item Value
RNA id TCONS_00031817
length 3385
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_016115
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5480125 ~ 5505094 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTTGTGAAGGCTGAAGAATGGGTGAAAGGGATTGCTATAACCCTGGCTAACCTGATTAGTTGGACCATACACATCCTGGGTACAAATAGCAGCTCCACCCCACCGGTCACTGCTCTCTCTGTCCTCAAGCTGCGCAATTAGTCATCAGCAATCATCACTACAAGGTCTCTCAACAACAATGAGTCCAAAAAATGTCGTTTTCAAGAAAATTTCCAAAGACAAGTCGGTGGGTGTGTATATGGGGAAGAGAGACTTTGTTGACCGAGTGGACTCAGTAGATCCAGTGGACGGTGTCATTCTTATTGACCCTGAACAGCTGAGGGGCAAAAAAGCATATGTCACATTGTCATGCGTGTTCCGGTATGGCCGTGATGACGACGCAGAGGTGTTGGGTATCTCGTTTAGGAAAGAGATCTACATTTCCACCCGGCAGGTCTACCCCGCACTGCAGGACAAAGAGCAGTGCATTCTCACCAAAGTGCAGGAGAAACTACTGCGCAAACTGGGGGACAATGCCTACCCCTTTTTCTTTGAATTCCCTGATAACTTGCCCTGCTCAGTTGGACTGCAGCCAGCCCCAAAAGATGTCGGAAAGCACTGTGCTGTTGAGTTTGAGGTGAAAGCCTTCTGTGCTGAGAGCCAGGATGCCAAAGTTCGCAAACGGAGCTCAGTCGGTCTGATGATCCGTAAGGTCCAGTATGCCCCAGAGAAGCTCGGACCCGCTCCCAGTGTGGAGACCACCCGTGACTTCCTCATGTCTGACAAACCGCTGCATTTGGAAGCTAGCTTGGAGAAGCAGACGTACTATCACGGAGAACCCATCAACGTAAGGGTCAAAATCAATAACCAATCCAACAAAAATGTGAGGAACATCATCCTTTCCGTGGAACAAAACGCCAACGTGGTGCTGTACTGCAATGACAATTATATGAAGGTGGTGGCcacagaggattctggGCACTCTGTTGATTCTGGTGCCAAACTGGAGAAAGTCTACACTTTGCTACCCCTGCTGGCCAATAACAGAGAACGCCGAGGAATTGCGCTGGATGGAAAATTAAAGCATGAAGATACTAATCTAGCCTCTTCCAGCATCATTAAAGAAGGCGTTCAGAAGGAAGTTCTGGGAATCATGGTGTcttacagagttgttgtgaagcttaTTGTTGGAGGCATGATGGGATCCagTGAGGTCGGAGTGGAACTTCCTTTTCAACTTATGCACCCAAAGCCTGACGCAGTGAAGGAAAGTGAAGCGGAAGAAGAAATGGTATTTGAGGAGTTCAAGCGCACCTACCTGAAGGGCATGCCTGAGGACGAGGATGAAGGAAATGCGAACATTGAGGAGAACGTGTAGAAGATCTCGAAGCATCGCTCGATATAGTAAAGTACATAATTAGGGATGTTAAAAATCATATAGAGAACACTGCGAAAGAGCACTTCTcggttacactgaaaaaaaaattattcattggatatGTTAAAAAGTTTTAAGGTAATTGGTTGGAAACTATTTATgtaggctgaatttaaataaattaagtcagtggttctcaaacttttttcaccaagtaccttagaaaaaaattgtctctccaagtaccactaacatgagcagtattgaaatacagtagcgtagtaggcccagtaaagcagctacaactcagtaaaataaaaaataaaaaacgtggcagattacctcagaaatataggctatatgtccaacccaagctcattctggaaacgtagccccgcggacgtttctggagaccgcgatttacgtggccggaggtccGTAAAGGCCgggtttggtttttttcgagcgaacgctgcagggcggtgtggcgccgctccacccctcctcttcgcgctcgccggccgacgcaatcagtttgtccgcctagctcacagcgttgcgtcggcggagaccccggaggaggaggagccggagccggccgcggtggacgacgaccgggattgagtccggggaacagcgggttccggaaatcaggtaagacgaaaaacggaattcggaaaataagggcgagaacgcggcgggatccgaaaacgtggtccgcagggctacgtttccacaatgagcccgggttgtatatgtcatatatggcatattatatatcatcatttttgataaattttgaaatgtgtttagcatgtacatgacatatttcattcctccgcgtaccactaaaaggaagcctgtgtaccactagtggtccacgcaccacagtttgagaaccactgaattaagttgaacattgtggtggctcagtggttagcactgtcaccttacagcaagaaggtcgctggttcgagtctctgctgggccagttggcatttctctgtggagtttgcatgttttccccatgttcatgtgggtttcctccgggtcctccggtttcccccacagtccagtgacatgcgctataggggaattggatgaactaaattggctgtagtgtatatgtgtgaatgagagtgtatgggtgtttcccagtactgggttgcggctggaagtgcatccgctgtgtaaaacatatgctggaatagttggcggttcattctgctgtggcgacccctgataaataagggactaagccgaaggaaaattaatgaattaaagttgaacattattaaatgtaatttgtttaaattcagcccatataaacagTTTGCAACTACATACCTTAAagacatttagtaaatccaatgaatcacttttttcagtgtatttgctGATTGTAGTTGCAATTAGAGATGAATAGAGATACTCCATCAATCATTCTTCAGCTGTCTGATCTCTGTGGAAGTGGGAcctgtaatttaaaattaatagaGAGCTGTTTCTCCTATTATATACAGATACAGAAGCTGCAAAATGCATATCTAAGTAGTTGTAAAACTTTGTGATATGAAGCAAGAACctttattgtaataaatgtattattatgaaACACTGTATTGTTATAAAATACTGAATTGTAGTGGAGTGTTCAATGATTAAAGCATGATGAAGGAGGAGGAACGAAAGAGGTctctttttgttgttatttaggatttttggtaacacttaataattacacactatgaaccattaaGCGTTAGCAAATAGTGAAATCATGATCTGTTAATcaataactctacattaataaatgttagtaagcagtttataactgcagctacaaaaactgtattcttgacttacaaacttattcataatgtgcttaatacttgtacttttgtactttatttatttttcattactaaatgaagtattgcattatttgcaAACCATTTATTTAGTTGgatgtttttaagatcattcaaaatgagttagtaaatgattaataaactattcaaatgaa

Function

GO:

id name namespace
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko02042 Bacterial toxins

ZFIN:

id description
ZDB-GENE-040426-1538 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

Ensembl:

ensembl_id ENSDART00000145035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031816 lncRNA downstream 4397 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031815 lncRNA downstream 4423 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031813 lncRNA downstream 13638 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00033763 lncRNA downstream 26603 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031791 lncRNA downstream 665853 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031822 lncRNA upstream 52275 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00033349 lncRNA upstream 196004 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00033764 lncRNA upstream 221644 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031828 lncRNA upstream 333802 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00031832 lncRNA upstream 524487 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031812 mRNA downstream 4204 5457388 ~ 5475921 (-) False XLOC_016114
TCONS_00031814 mRNA downstream 4204 5467885 ~ 5475921 (-) False XLOC_016114
TCONS_00031811 mRNA downstream 4215 5456541 ~ 5475910 (-) False XLOC_016114
TCONS_00031810 mRNA downstream 13417 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031807 mRNA downstream 36380 5410432 ~ 5443745 (-) False XLOC_016112
TCONS_00031819 mRNA upstream 3448 5508542 ~ 5517438 (-) True XLOC_016116
TCONS_00031820 mRNA upstream 38807 5543901 ~ 5561005 (-) False XLOC_016117
TCONS_00031823 mRNA upstream 54723 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031824 mRNA upstream 204330 5709424 ~ 5723786 (-) True XLOC_016119
TCONS_00031825 mRNA upstream 221259 5726353 ~ 5728843 (-) False XLOC_016120
TCONS_00031800 other downstream 436275 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 465496 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 495721 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 554998 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 909022 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 49571 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 536945 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1261199 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1403568 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3129146 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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