RNA id: TCONS_00031818


Basic Information

Item Value
RNA id TCONS_00031818
length 1179
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_016115
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5480125 ~ 5505094 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGTCCAAAAAATGTCGTTTTCAAGAAAATTTCCAAAGACAAGTCGGTGGGTGTGTATATGGGGAAGAGAGACTTTGTTGACCGAGTGGACTCAGTAGATCCAGTGGACGGTGTCATTCTTATTGACCCTGAACAGCTGAGGGGCAAAAAAGCATATGTCACATTGTCATGCGTGTTCCGGTATGGCCGTGATGACGACGCAGAGGTGTTGGGTATCTCGTTTAGGAAAGAGATCTACATTTCCACCCGGCAGGTCTACCCCGCACTGCAGGACAAAGAGCAGTGCATTCTCACCAAAGTGCAGGAGAAACTACTGCGCAAACTGGGGGACAATGCCTACCCCTTTTTCTTTGAATTCCCTGATAACTTGCCCTGCTCAGTTGGACTGCAGCCAGCCCCAAAAGATGTCGGAAAGCACTGTGCTGTTGAGTTTGAGGTGAAAGCCTTCTGTGCTGAGAGCCAGGATGCCAAAGTTCGCAAACGGAGCTCAGTCGGTCTGATGATCCGTAAGGTCCAGTATGCCCCAGAGAAGCTCGGACCCGCTCCCAGTGTGGAGACCACCCGTGACTTCCTCATGTCTGACAAACCGCTGCATTTGGAAGCTAGCTTGGAGAAGCAGACGTACTATCACGGAGAACCCATCAACGTAAGGGTCAAAATCAATAACCAATCCAACAAAAATGTGAGGAACATCATCCTTTCCGTGGAACAAAACGCCAACGTGGTGCTGTACTGCAATGACAATTATATGAAGGTGGTGGCcacagaggattctggGCACTCTGTTGATTCTGGTGCCAAACTGGAGAAAGTCTACACTTTGCTACCCCTGCTGGCCAATAACAGAGAACGCCGAGGAATTGCGCTGGATGGAAAATTAAAGCATGAAGATACTAATCTAGCCTCTTCCAGCATCATTAAAGAAGGCGTTCAGAAGGAAGTTCTGGGAATCATGGTGTcttacagagttgttgtgaagcttaTTGTTGGAGGCATGATGGGATCCagTGAGGTCGGAGTGGAACTTCCTTTTCAACTTATGCACCCAAAGCCTGACGCAGTGAAGGAAAGTGAAGCGGAAGAAGAAATGGTATTTGAGGAGTTCAAGCGCACCTACCTGAAGGGCATGCCTGAGGACGAGGATGAAGGAAATGCGAACATTGAGGAGAACGTGTAG

Function

GO:

id name namespace
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
ko02042 Bacterial toxins

ZFIN:

id description
ZDB-GENE-040426-1538 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in G protein-coupled receptor internalization. Predicted to act upstream of or within signal transduction. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in epiphysis; retina; and retinal outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin).

Ensembl:

ensembl_id ENSDART00000193037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031816 lncRNA downstream 6423 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031815 lncRNA downstream 6449 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031813 lncRNA downstream 15664 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00033763 lncRNA downstream 28629 5449781 ~ 5453522 (-) True XLOC_016113
TCONS_00031791 lncRNA downstream 667879 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031822 lncRNA upstream 55113 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00033349 lncRNA upstream 198842 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00033764 lncRNA upstream 224482 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031828 lncRNA upstream 336640 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00031832 lncRNA upstream 527325 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031812 mRNA downstream 6230 5457388 ~ 5475921 (-) False XLOC_016114
TCONS_00031814 mRNA downstream 6230 5467885 ~ 5475921 (-) False XLOC_016114
TCONS_00031811 mRNA downstream 6241 5456541 ~ 5475910 (-) False XLOC_016114
TCONS_00031810 mRNA downstream 15443 5456541 ~ 5466708 (-) False XLOC_016114
TCONS_00031809 mRNA downstream 38479 5434948 ~ 5443672 (-) True XLOC_016112
TCONS_00031819 mRNA upstream 6286 5508542 ~ 5517438 (-) True XLOC_016116
TCONS_00031820 mRNA upstream 41645 5543901 ~ 5561005 (-) False XLOC_016117
TCONS_00031823 mRNA upstream 57561 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031824 mRNA upstream 207168 5709424 ~ 5723786 (-) True XLOC_016119
TCONS_00031825 mRNA upstream 224097 5726353 ~ 5728843 (-) False XLOC_016120
TCONS_00031800 other downstream 438301 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 467522 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 497747 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 557024 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031786 other downstream 911048 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031821 other upstream 52409 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031833 other upstream 539783 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1264037 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1406406 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 3131984 8634240 ~ 8635132 (-) True XLOC_016162

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00355244_00360638.mRNA True 1144 mRNA 0.44 9 CI01000003 355244 ~ 360793 (+)