Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031822 |
| length | 773 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 2 |
| gene id | XLOC_016117 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 5543901 ~ 5561019 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0010821 | regulation of mitochondrion organization | biological_process |
| GO:0005743 | mitochondrial inner membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008236 | serine-type peptidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050327-8 | Predicted to enable serine-type endopeptidase activity. Predicted to be involved in signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Is expressed in brain and liver. Human ortholog(s) of this gene implicated in Leber hereditary optic neuropathy; coronary artery disease; hyperinsulinism; myopia; and type 2 diabetes mellitus. Orthologous to human PARL (presenilin associated rhomboid like). |
| ensembl_id | ENSDART00000144640 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031816 | lncRNA | downstream | 81641 | 5474543 ~ 5475728 (-) | True | XLOC_016114 |
| TCONS_00031815 | lncRNA | downstream | 81667 | 5474543 ~ 5475702 (-) | False | XLOC_016114 |
| TCONS_00031813 | lncRNA | downstream | 90882 | 5463408 ~ 5466487 (-) | False | XLOC_016114 |
| TCONS_00033763 | lncRNA | downstream | 103847 | 5449781 ~ 5453522 (-) | True | XLOC_016113 |
| TCONS_00031791 | lncRNA | downstream | 743097 | 4812694 ~ 4814272 (-) | True | XLOC_016105 |
| TCONS_00033349 | lncRNA | upstream | 140271 | 5701098 ~ 5702648 (-) | True | XLOC_016118 |
| TCONS_00033764 | lncRNA | upstream | 165911 | 5726738 ~ 5728895 (-) | True | XLOC_016120 |
| TCONS_00031828 | lncRNA | upstream | 278069 | 5838896 ~ 5840494 (-) | True | XLOC_016123 |
| TCONS_00031832 | lncRNA | upstream | 468754 | 6029581 ~ 6034247 (-) | True | XLOC_016125 |
| TCONS_00031834 | lncRNA | upstream | 481212 | 6042039 ~ 6051747 (-) | False | XLOC_016126 |
| TCONS_00031819 | mRNA | downstream | 39931 | 5508542 ~ 5517438 (-) | True | XLOC_016116 |
| TCONS_00031817 | mRNA | downstream | 52275 | 5480125 ~ 5505094 (-) | False | XLOC_016115 |
| TCONS_00031818 | mRNA | downstream | 55113 | 5482151 ~ 5502256 (-) | True | XLOC_016115 |
| TCONS_00031812 | mRNA | downstream | 81448 | 5457388 ~ 5475921 (-) | False | XLOC_016114 |
| TCONS_00031814 | mRNA | downstream | 81448 | 5467885 ~ 5475921 (-) | False | XLOC_016114 |
| TCONS_00031824 | mRNA | upstream | 148597 | 5709424 ~ 5723786 (-) | True | XLOC_016119 |
| TCONS_00031825 | mRNA | upstream | 165526 | 5726353 ~ 5728843 (-) | False | XLOC_016120 |
| TCONS_00031826 | mRNA | upstream | 174043 | 5734870 ~ 5776030 (-) | True | XLOC_016121 |
| TCONS_00031827 | mRNA | upstream | 250655 | 5811482 ~ 5836116 (-) | True | XLOC_016122 |
| TCONS_00031829 | mRNA | upstream | 373075 | 5933902 ~ 5942115 (-) | False | XLOC_016124 |
| TCONS_00031800 | other | downstream | 513519 | 5040167 ~ 5043850 (-) | False | XLOC_016107 |
| TCONS_00031796 | other | downstream | 542740 | 4903560 ~ 5014629 (-) | False | XLOC_016107 |
| TCONS_00031799 | other | downstream | 572965 | 4942960 ~ 4984404 (-) | False | XLOC_016107 |
| TCONS_00031798 | other | downstream | 632242 | 4907796 ~ 4925127 (-) | False | XLOC_016107 |
| TCONS_00031786 | other | downstream | 986266 | 4571013 ~ 4571103 (-) | True | XLOC_016102 |
| TCONS_00031833 | other | upstream | 481212 | 6042039 ~ 6045395 (-) | False | XLOC_016126 |
| TCONS_00031851 | other | upstream | 1205466 | 6766293 ~ 6766407 (-) | True | XLOC_016138 |
| TCONS_00031853 | other | upstream | 1347835 | 6908662 ~ 6908681 (-) | True | XLOC_016140 |
| TCONS_00031892 | other | upstream | 3073413 | 8634240 ~ 8635132 (-) | True | XLOC_016162 |
| TCONS_00031895 | other | upstream | 3120115 | 8680942 ~ 8684933 (-) | True | XLOC_016164 |
