RNA id: TCONS_00033764


Basic Information

Item Value
RNA id TCONS_00033764
length 218
lncRNA type sense_over
GC content 0.51
exon number 2
gene id XLOC_016120
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5726353 ~ 5728895 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCACCCGTGGAGGTGCCACTATAAAATACCATTCAGAGGAGTAGAAAGAGACACTTAGGGAGCAGAGTTCTGAGTTAAAGAAGCAGCAGAAATGGCCTCCTCGCAACTCCACCTGACAGCAACTCTTCTCTGTCTGGCCATGATGGCGGGCATCATATGTGGACGATCGCATATGCTCCTGAACTCTGCACTACAGGCGTCTCGCGGCACTTCTGA

Function

GO:

id name namespace
GO:0030334 regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
ko04011 MAPK signaling pathway - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033349 lncRNA downstream 24090 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031822 lncRNA downstream 165911 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031816 lncRNA downstream 251010 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031815 lncRNA downstream 251036 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031813 lncRNA downstream 260251 5463408 ~ 5466487 (-) False XLOC_016114
TCONS_00031828 lncRNA upstream 110001 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00031832 lncRNA upstream 300686 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031834 lncRNA upstream 313144 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031841 lncRNA upstream 378208 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 1146856 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031824 mRNA downstream 2952 5709424 ~ 5723786 (-) True XLOC_016119
TCONS_00031823 mRNA downstream 165732 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031820 mRNA downstream 165733 5543901 ~ 5561005 (-) False XLOC_016117
TCONS_00031819 mRNA downstream 209300 5508542 ~ 5517438 (-) True XLOC_016116
TCONS_00031817 mRNA downstream 221644 5480125 ~ 5505094 (-) False XLOC_016115
TCONS_00031826 mRNA upstream 5975 5734870 ~ 5776030 (-) True XLOC_016121
TCONS_00031827 mRNA upstream 82587 5811482 ~ 5836116 (-) True XLOC_016122
TCONS_00031829 mRNA upstream 205007 5933902 ~ 5942115 (-) False XLOC_016124
TCONS_00031830 mRNA upstream 207682 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031831 mRNA upstream 276304 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031821 other downstream 165719 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 682888 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 712109 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031833 other upstream 313144 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 1037398 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1179767 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2905345 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2952047 8680942 ~ 8684933 (-) True XLOC_016164

Expression Profile

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