RNA id: TCONS_00031828


Basic Information

Item Value
RNA id TCONS_00031828
length 837
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_016123
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5838896 ~ 5840494 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTGGGCATGTGTGATCCAGCACGTTTGCATTCGCAGTGATTTGTCAGAGAAGTCTCTGGGATGGATATGATTTACACGCTTCTTTGCGGACTGCTCGTGGTCAGTCTGTCACTTTACGCAAAACCCTTCACCACAGTCCAGTACAAGTCCACGAAAACTCTCCCCGCAGCAGAGAGCAGGAGCGCGCTCAACAGGTCGCGCGCAGCCAAAGAGCCTCCAGATCTGGACGCGAAAACCGGCGCAAAACAGCGGCCGTCATCCGGTGATCAGTCACGCAAAAAACAGCCTCCCAAAAACAGAGACAAACGGAAAAACTGCTTCGGCTTAAAGATGGATAGAATAAGCGATGTGAGCGGAATGGGCTGCAAAAGTGACTGAGCGACATATGGGAGGTTATTCATGCTGAGTAAAAAGGACTAAATGTGTCTCATGCAGAATGAACATGAATCAGGAATGCTTAGTCAGTGGTGCTTTTGGATTGCAACAGTTTGCAATATTTGGATACATGTTGTTGGATCACTCCCTTACTGTTGTTAAATTGCATTTTGAATTTTAGCAAACGAGCATAaacttaaaacaacatttaattctCTTGCATCAGTGTCGATCAAACTGCGACAGGAATAACTCATAAGTGATTTGTGCCTTGGTCAATGTTGGGTTTGTGTTGAAACTGCATGTTTAAGACTTTGTCTATGTTCTTGTAAAAGAAAACAGTATTGAGACTACTCTATGTTACACTGAGAACGAGTTATGTACAGAGATGTATAATAAacttatagttttttattattcatttcccTTCTCCTTTAGttgcaaaacattgtttttatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033764 lncRNA downstream 110001 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 136248 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031822 lncRNA downstream 278069 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031816 lncRNA downstream 363168 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031815 lncRNA downstream 363194 5474543 ~ 5475702 (-) False XLOC_016114
TCONS_00031832 lncRNA upstream 189087 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031834 lncRNA upstream 201545 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031841 lncRNA upstream 266609 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 1035257 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 1239808 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031827 mRNA downstream 2780 5811482 ~ 5836116 (-) True XLOC_016122
TCONS_00031826 mRNA downstream 62866 5734870 ~ 5776030 (-) True XLOC_016121
TCONS_00031825 mRNA downstream 110053 5726353 ~ 5728843 (-) False XLOC_016120
TCONS_00031824 mRNA downstream 115110 5709424 ~ 5723786 (-) True XLOC_016119
TCONS_00031823 mRNA downstream 277890 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031829 mRNA upstream 93408 5933902 ~ 5942115 (-) False XLOC_016124
TCONS_00031830 mRNA upstream 96083 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031831 mRNA upstream 164705 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031835 mRNA upstream 201554 6042048 ~ 6051836 (-) True XLOC_016126
TCONS_00031836 mRNA upstream 211422 6051916 ~ 6065416 (-) True XLOC_016127
TCONS_00031821 other downstream 277877 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 795046 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 824267 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031833 other upstream 201545 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 925799 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 1068168 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2793746 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2840448 8680942 ~ 8684933 (-) True XLOC_016164

Expression Profile

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