RNA id: TCONS_00031830


Basic Information

Item Value
RNA id TCONS_00031830
length 848
RNA type mRNA
GC content 0.57
exon number 3
gene id XLOC_016124
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 5933902 ~ 5942355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTGCCCGCTCGCCCTCCGCATGCGTATGTGATTTGCTAGCGTTTGTGTGTGTTCTCCATGCTCCCTAACGTGTCACATTGATGAAGACAATGAGAAAAGTCTTATTGTCCGACTGGAATGTGGCAGAAGAAGACAACGGGACGAGCATGTCATCGCTTGGCACCAGTGTCAGGTCTGCTTACAGCATGACACACCGTGGAAGGAGGGAGACAGGACTGGATGTCTTCTGATacatgatgacgatgatgatgatgatgcttgAGGAAATTTCGAAACCTTAATCTGAATTGATGATTGGAAACATGCACTGATAAAAGTGAGACCTCCGCCTGTCAGTCGACCCATGAGATGGAGCTTCTCCCGCTGGGTGTGCTGAGTCGCGGACGTCCCCTTCACCTGCAGGCGGACTCCCTGTGGCTCCAGCACCCTGTCGTTGAGGAGCAGGTGGAGCTGTGGTGGTTCAACAAGCCGCACGTCTCTCTCCTGTGCTACTGCTTCTCTGTGGCCATGATCCTGAGTCTGGGTTCGGCCGGTGTGGGTCTCCTCTCCACCGCTTCAACCGCTGTGGGACCCTCAGTGCTGTGGCGTTTGGCTGTGGGCTCCACCCTGTGCCTGCTGGCGCTGGTGGTCCTGATGAAGCAGCTGCTCAGCTCGGCCGTGCAGGACATGGGATGCATTCGCAACCGCAGACGCATCGAACAGCTGCGCAGCGGGGGAACCGTGGACCCCTTACTTCTGCTCTTCACTGGTTTGGCACTGGTGGTCTGCGGGATAACACTGCTCAGTCTCTCTCAGACAGACATGCTGCTTTCTGGCGGGACCCTCCTGGCCTGTGGGGGTGCTGTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-54 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM125 (transmembrane protein 125).

Ensembl:

ensembl_id ENSDART00000110469

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031828 lncRNA downstream 96083 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 207682 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 233929 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031822 lncRNA downstream 375750 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031816 lncRNA downstream 460849 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031832 lncRNA upstream 87226 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031834 lncRNA upstream 99684 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031841 lncRNA upstream 164748 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 933396 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 1137947 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031827 mRNA downstream 100461 5811482 ~ 5836116 (-) True XLOC_016122
TCONS_00031826 mRNA downstream 160547 5734870 ~ 5776030 (-) True XLOC_016121
TCONS_00031825 mRNA downstream 207734 5726353 ~ 5728843 (-) False XLOC_016120
TCONS_00031824 mRNA downstream 212791 5709424 ~ 5723786 (-) True XLOC_016119
TCONS_00031823 mRNA downstream 375571 5559817 ~ 5561006 (-) True XLOC_016117
TCONS_00031831 mRNA upstream 62844 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031835 mRNA upstream 99693 6042048 ~ 6051836 (-) True XLOC_016126
TCONS_00031836 mRNA upstream 109561 6051916 ~ 6065416 (-) True XLOC_016127
TCONS_00031837 mRNA upstream 149703 6092058 ~ 6104035 (-) True XLOC_016128
TCONS_00031838 mRNA upstream 162023 6104378 ~ 6112862 (-) False XLOC_016129
TCONS_00031821 other downstream 375558 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 892727 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 921948 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031833 other upstream 99684 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 823938 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 966307 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2691885 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2738587 8680942 ~ 8684933 (-) True XLOC_016164

Expression Profile

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