RNA id: TCONS_00031831


Basic Information

Item Value
RNA id TCONS_00031831
length 2327
RNA type mRNA
GC content 0.46
exon number 16
gene id XLOC_016125
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6005199 ~ 6039757 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCATCGAGTGTTTGGTTGGAGTGTTTATATATTGAGCTGCTGTGTTAACGTTCCTTCCTTTACTGTGGTGAAGTCCAACTGGTCTGACACATTGCAAACCTGAAGATGGCTGCTTTAAGAAACAGGGTTTTTGTTATCGGAGTGGGAATGACGAAGTTTGAAAAGCCTGGTGCAAGAGACATTGATTATCCAGACATGGCCAAAGAAGCAGGGCAGAGAGCGCTGGCCGATGCTGGAATCAAGTACAGTGCCATTCAGCAAGCATGTGTGGGCTATGTATATGGTGACTCCACGTGTGGCCAAAGGGCTATCTATCACAGTCTGGGTCTGTCAGGAATTCCCATAATTAATGTCAACAATAACTGCTCTACTGGTTCCACTGCACTGTTTATGGGTCGTCAGCTCATTCAGGGAGGTTTGGCTGACTGTGTCCTTGCCTTGGGCTTTGAGAAAATGGAAAGAGGCTCACTGTCCTCAAAGTACATGGACAGAACCAACCCTATGGACAAGCACATGGAGGTAATGATCAACCGTTATGGGTTGGCGGCGGTACCGGCTGCACCTCAGATGTTTGGCAACGCTGGCAGAGAACACATGGAGAAGTACGGTACAAAACCAGAGCATTTTGCCAAAGTTGCTTGGAAGAACCACAAGCATTCCACCAATAACCCATACTCTCAGTTCCAGGATGAATATAGTCTGGAGCAGGTCATTGACTCCAGGAAGGTCTTTGAGTTCCTCACGCTCTTGCAGTGCTGCCCGACGTCAGACGGAGCAGGCGCTGCAGTGCTGGCCAGTGAGTCGTTTGTAAGAAGGAACGGACTAGAAAAAAAGGCGGTAGAGATCGTAGCACAAGAAATGGTCACAGACCTCTCCACCACCTTTGAGGAAAACAGCTGTATGAAAATGGTTGGTTATGACATGACCCGTCTCGCAGCTGAGAGGTGTTATGACACCGCTGGCGTGAAGCCGTCAGATGTGGACGTGATCGAGCTGCACGACTGCTTCTCTGCCAATGAGCTGATCACCTATGAAGCGCTGGGGCTCTGTCCTGAGGGCAAAGCCGGGGAGCTGATTGATCGGGGTGATAACACATATGGTGGCAAGTGGGTGATAAATCCCAGTGGAGGACTCATCTCTAAAGGACACCCACTCGGAGCTACAGGTCTGGCTCAGTGTGCGGAGCTGTGTTGGCAGCTGAGGGCCGAGGCGGGGCCCCGACAGGTCCCCGGGGCAAAGCTCGCCCTGCAGCACAACATCGGCCTCGGTGGAGCCGTGGTAGTCACACTCTACAAGATGGGCTTCCCTCAGGAAACAAGCTCTAGGATAGCAGCGGTGTCCACCAGCGCCTCCAGTGACCGCTCGGGGTTCAAAGCTCACACCGTCTTCAAGGAGATCGAGAAGAAGTTGCAGGAGGAAGGTGAAGCATATGTAAAGAAAATTGGCGGTGTTTTTGCATTCAAAGTGAAAGATGGTCCCGGTGGAAGTGATGCATTATGGGTGGTGGATGTGAAGAATGGCAAAGGCTCTGTTTCTAGTGACGCAGGTAAAAAGGCAGACTGCACTATCGCTATGGCTGACGCAGATCTGCTGGATATGATGACAGGGCAGCTCAATCCACAAACGGCATTTTTCCAAGGAAAGCTAAAGATCACCGGGAATATGGGGATGGCCATGAAACTTCAAAACCTTCAGCTGACGCCCGGAAAAGCCAAACTGTGAAACCACAGCTCCCAACAAACAGGAAAATGGCACAAACAACTAATTTctacatttctgtttaacatatcACACAATAACAAGAGGTCTATTGGTCACTCCATAAAtgtaacagcaaaaaacacactTGAAAAAGCATGTCAAGCATAATCCAGTACAAAAAAGTAAGCTTGTTACTAGCATATTAATGATAATGTGACTGTTATGGAGCATAATTGAAATAACAATGTGTTGCCATTACAATATTTATAAGTATTAATCAGGCAGAATAAGAAATATGTCTACTTAAACTAATGTTACAGCAGTGACCTTCCTCAAATCAGCATTGATCAAGTGTGATTGGTTTAAAAGCACTGAAGCGTTAATGATGTGTCCGTTAATAAGCGATTGATATCCGGTTATCACGCCTGCATCGACTTACTTTGGACTTTTAAGTGATTCTAGAAAAGTCGATATAAATCAGAATCAAGCTTTGATATTATCAGATGCTGATATTGAATCTTTAAAGACCGGAGAACAGGGCGTCGAGTGTACAATACtgtaatttaaaaagtatttttggtATTAATCAAGTGATTTCTAATAAATATTCCGTTTACCTCAAAA

Function

GO:

id name namespace
GO:0032385 positive regulation of intracellular cholesterol transport biological_process
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1846 Predicted to enable lipid binding activity; propanoyl-CoA C-acyltransferase activity; and propionyl-CoA C2-trimethyltridecanoyltransferase activity. Predicted to be involved in positive regulation of intracellular cholesterol transport. Predicted to act upstream of or within lipid transport. Predicted to be located in mitochondrion and peroxisome. Is expressed in intestinal bulb; lens; liver; and solid lens vesicle. Orthologous to human SCP2 (sterol carrier protein 2).

Ensembl:

ensembl_id ENSDART00000013079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031828 lncRNA downstream 164705 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 276304 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 302551 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031822 lncRNA downstream 444372 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031816 lncRNA downstream 529471 5474543 ~ 5475728 (-) True XLOC_016114
TCONS_00031834 lncRNA upstream 2282 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031841 lncRNA upstream 67346 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 835994 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 1040545 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 1362734 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031830 mRNA downstream 62844 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031829 mRNA downstream 63084 5933902 ~ 5942115 (-) False XLOC_016124
TCONS_00031827 mRNA downstream 169083 5811482 ~ 5836116 (-) True XLOC_016122
TCONS_00031826 mRNA downstream 229169 5734870 ~ 5776030 (-) True XLOC_016121
TCONS_00031825 mRNA downstream 276356 5726353 ~ 5728843 (-) False XLOC_016120
TCONS_00031835 mRNA upstream 2291 6042048 ~ 6051836 (-) True XLOC_016126
TCONS_00031836 mRNA upstream 12159 6051916 ~ 6065416 (-) True XLOC_016127
TCONS_00031837 mRNA upstream 52301 6092058 ~ 6104035 (-) True XLOC_016128
TCONS_00031838 mRNA upstream 64621 6104378 ~ 6112862 (-) False XLOC_016129
TCONS_00031839 mRNA upstream 66734 6106491 ~ 6115688 (-) False XLOC_016129
TCONS_00031821 other downstream 444180 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 961349 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 990570 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031833 other upstream 2282 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031851 other upstream 726536 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 868905 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2594483 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2641185 8680942 ~ 8684933 (-) True XLOC_016164

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU28341 True 705 TUCP 0.37 1 CI01000004 1347470 ~ 1348174 (+)
bowfin (Amia calva) AMCG00005256 True 6659 mRNA 0.57 27 CM030140.1 19999167 ~ 20023496 (-)
mexican tetra (Astyanax mexicanus) TU28341 True 665 lncRNA 0.39 1 NC_035899.1 22886835 ~ 22887499 (-)