RNA id: TCONS_00031833


Basic Information

Item Value
RNA id TCONS_00031833
length 790
RNA type processed_transcript
GC content 0.41
exon number 3
gene id XLOC_016126
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6042039 ~ 6051836 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACTGTATTTACACAGCAGGGCATGCTGATGACTGGTCATGACacttcctggtgatgtggagccaatccgcgaatcacagcacattatgttagctgaccaatcagagcatctTGAGGACAGGCTTTGGGAGGAACTACGAAaaatgacagtcgttttcatgttagctgagtagatgtatataatcaaagtaggatatatgaaaaaataatgtgatttttcaacaaattaattataagcacacattgctttgcattttttttaacacaaccaAACCTTacaaatacactctggaccacccctttaacaaaacacacaatgtACCAAGTGAAGAATGCAATTGTGTATGAATATTTACAGTTGTGTACTCTATTCTTCACTCAGTCACACTAGTATGTATATTTCCCTGTAGGCAGAAGACAGTGAAAGGTTTAAGACAGTGGTGCAGTTTGAGTGTCGAGGCCTGGAACCAGTCGATTTTCAACCTCAGGCTGGTTTTGCTGCTAGCGGAGCAGAAACGTCCACCCAGTTCCCTGAAATCAACCTGCAAGAGAAAGACTGGACGGACTATGATGAGAAGGCCAGCGAGTCTGTGGGTATCTATGAGGTCACACATCAGTTCGTCAAATGCTAAAAAAGAGTCAGACTGAAGAACAACCGGATGAAGATCTGTTTGAAGTTCACTACACCCCACTTCAGTTTGTACACTTATTTTGTGAGATGGAGATGAATATTTGGTGATTCTCTTggtttaacaataaataaagacTGGGATGACCGCTATGGCAAG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-34 Predicted to enable zinc ion binding activity. Orthologous to human CZIB (CXXC motif containing zinc binding protein).

Ensembl:

ensembl_id ENSDART00000144959

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031832 lncRNA downstream 7792 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 201545 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 313144 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 339391 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031822 lncRNA downstream 481212 5557369 ~ 5560827 (-) False XLOC_016117
TCONS_00031841 lncRNA upstream 61708 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 830356 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 1034907 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 1357096 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 1442197 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00031831 mRNA downstream 2282 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031830 mRNA downstream 99684 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031829 mRNA downstream 99924 5933902 ~ 5942115 (-) False XLOC_016124
TCONS_00031827 mRNA downstream 205923 5811482 ~ 5836116 (-) True XLOC_016122
TCONS_00031826 mRNA downstream 266009 5734870 ~ 5776030 (-) True XLOC_016121
TCONS_00031836 mRNA upstream 6521 6051916 ~ 6065416 (-) True XLOC_016127
TCONS_00031837 mRNA upstream 46663 6092058 ~ 6104035 (-) True XLOC_016128
TCONS_00031838 mRNA upstream 58983 6104378 ~ 6112862 (-) False XLOC_016129
TCONS_00031839 mRNA upstream 61096 6106491 ~ 6115688 (-) False XLOC_016129
TCONS_00031840 mRNA upstream 61242 6106637 ~ 6115389 (-) False XLOC_016129
TCONS_00031821 other downstream 481020 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 998189 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 1027410 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031799 other downstream 1057635 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 1116912 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031851 other upstream 720898 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 863267 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2588845 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2635547 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 3361163 9406558 ~ 9406675 (-) True XLOC_016169

Expression Profile

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