RNA id: TCONS_00031836


Basic Information

Item Value
RNA id TCONS_00031836
length 1822
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_016127
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6051916 ~ 6065416 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGGATACGAGCAGAGTGTGGGACACAGGAGGaggagcggtgtgtgtgtgtattattagaATAGCGACACACACACTTGTGATTCCACACTGCAAGCATGGCTGGCGACAGTGAAACACATCTTAAGGACAGAGCGGAAAACGGCCACGCCGTCCGACAGCCTTTCCTCATCGGTGTGTCCGGAGGCACCGCCAGTGGGAAGTCTTCAGTATGTGAGAAGATCATGGAGCTGCTGGGCCAGAATAAGATTGACCGGCATCAGCGTCAGGTGGTGATTCTCAGTCAGGACAGCTTTTACAGGGAGCTCACGCCCGAACAGAAGGCCAAAGCAGTCAAGGGCCAGTTCAACTTCGATCATCCAGATGCTTTCGACAGTGAGCTGATCATGAAGACTCTGCGTGACATCATTCAGGGGAAAACCGTGCACATCCCAGTGTATGACTTCGTTACCCATTCCAGGAAGGATGAGTTTTTGACGTTGTATCCAGCAGATGTGGTTCTGTTTGAGGGGATTCTCATGTTCTACTCGCAGGAGATTCGGGATCTGTTCAAGATGAAGCTGTTTGTGGACACAGACCCAGACACACGCCTCTCACGGAGAGTGTTACGGGACATTAGTGAGAGAGGGCGAGAGTTGGAGCAGGTTCTGAACCAGTACATCACCTTTGTGAAGCCAGCCTTCGAGGAGTTCTGCCTTCCTACTAAAAAGTATGCAGATGTCATCATCCCCCGAGGCGCAGACAATCTTGTGGCTATTAATCTGATCGTGCAGCATATTCAGGACATCCTGAACGGTGGTTTCACCAAACGGCAGAACGGTTTCCAGAATGGCCACGGGACGCCCAGACAAAGACGGACGTCTGAGTCCAGCAGACCTCACTGACACCACTACAGCCTTCCCTCCATTGAGGAGAGGGCAGAACTCAATAATACCAGCAGAGCATCCCGTTTATCCTGTGAGAATGAGGGATGCTGCAGCTGACTTGCCTTTGTTATTGTTACCGTTATTTTGCATTTGAAATGTTGTCATGGATGATTGTTTGCTTTTACAGTTCTTTTTCCCTAAGGGTTTTGATGGTGCTGTATGTTTTTGGAaggttttgattgattgattcgaCCTGCGCTGTCAGCTTTCTCATCTACTCCGAAAATAAACAAATTGTATGAAAAGTCAGACTGGAAGCGGAGTAAACGTGATCACAGTGCTTTCAGCACACTTACTTGAAGTCAGAGCTCAGGTCGGGTGGATTATTTCATCCACAAAGTAGATATAAACCCTAGTTACCTCATATTTGAGGCCaattttttagtgtgtgtgtgtgagagagagtgaatCATGTAATTAAGATGACAATATGGTACACACGTTTTTATATTGTCACTAATTTGACCTTATTTGAGTAGATTTCTAGTGAaatcttgttttttgttattacaaTTGTAGTGTTTTGTACGTATGACGTGACAACATTGTGTACTTTATTAGCAGGGTTTTCTGAACACACTATCACAATAGTCAAGTATAGTTTTAGCCAGATAGTATTGCCTAAACCACAATGACTCAAATCAGGGATTATGGTCAAAtatgtttcttattttaaaacacaaaatacctCAACAGCATTTATTGTTAACTTTAAGTACGTGAAGTGTACTCTGTTCAGTAACCCAGGGCACTACTTTAAAACGCCTGTGTTTACTTCCCCCCCCCTCACGCCTCTGTGGCtggtatttttatgtaaaattctCCCTCGGATGGTTTTTTTTTAACGTATGATCCATTGCGTagtggtgaaataaaataaaatcataaaaactaAA

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004849 uridine kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0019206 nucleoside kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5265 Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK2 (uridine-cytidine kinase 2).

Ensembl:

ensembl_id ENSDART00000037698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031834 lncRNA downstream 169 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 17669 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 211422 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 323021 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 349268 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031841 lncRNA upstream 41687 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 810335 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 1014886 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 1337075 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 1422176 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00031835 mRNA downstream 80 6042048 ~ 6051836 (-) True XLOC_016126
TCONS_00031831 mRNA downstream 12159 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031830 mRNA downstream 109561 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031829 mRNA downstream 109801 5933902 ~ 5942115 (-) False XLOC_016124
TCONS_00031827 mRNA downstream 215800 5811482 ~ 5836116 (-) True XLOC_016122
TCONS_00031837 mRNA upstream 26642 6092058 ~ 6104035 (-) True XLOC_016128
TCONS_00031838 mRNA upstream 38962 6104378 ~ 6112862 (-) False XLOC_016129
TCONS_00031839 mRNA upstream 41075 6106491 ~ 6115688 (-) False XLOC_016129
TCONS_00031840 mRNA upstream 41221 6106637 ~ 6115389 (-) False XLOC_016129
TCONS_00031842 mRNA upstream 85439 6150855 ~ 6182098 (-) True XLOC_016130
TCONS_00031833 other downstream 6521 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 490897 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 1008066 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031796 other downstream 1037287 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031851 other upstream 700877 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 843246 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2568824 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2615526 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 3341142 9406558 ~ 9406675 (-) True XLOC_016169

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01321057_01329157.mRNA True 936 mRNA 0.48 10 CI01000004 1321057 ~ 1329157 (+)