RNA id: TCONS_00031837


Basic Information

Item Value
RNA id TCONS_00031837
length 1411
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_016128
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6092058 ~ 6104035 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATTTGTGACGGGCAGCGGTTTTTCTTTGACGCGGAACTTACCAAGAAACGAAAATATTTGTCAAATAACAGTTTGCCCTGCATAaatattgatgtatttatttaactaAGGGTTTGTTGGTTTCTTTAGTGTAGCCATAACAGTTTTGCGGGGGTCGTTTTAGTGTGAAGAGACTAACGGCAAAGTAAGCTCAAGAATGACAACCTTACAGAAGAAAGTAAATCAGGACAAACAGGTGCTCGCTGAGGCACTGGACACCGAGGCTCAGTCGCTGGTGTTTGTAAAACGCATGGTGGTTATTGCTGTATCGTCCATCACGTACCTGCGTGGGATATTTCCAGAGGACTCCTACAGATCTAGATACCTGGAGGATTTGTGTATCAAAGTCCTCAAACAGGACTGTTCCTCTCCTGGAGCCCACAAACTCATCAAATGGCTGATGGGATGTTTTGATGCTTTGGAGAAGAGATATCTTCAAATGTTGGTAATTGggGTGCACACAAGCCCACATGACAGTAATCACGTCATCGAGTCCTATCAGTTTAAGTTCAGATACTCAGAGCATGGACCACAAATGGACATCCTGAGTAATGTGAATGGGGACATCAGAGTGACCTTAGAGGACACAAAGAAAGCTTCAACACTCCTGATCAGGAAGCTGTTTCTTCTCATGCAGAATCTAGAGGCTCTGCCCACCGCCGTTCACCTCACGATGAAACTCTACTACAACGATGATGTTACGCCTCCTGAATATGAGCCACCAGGATTTAAAGCAGGGGCGAATGAAAGTCTGTGGTTTGAGGGAACAGCGGTGCACTTCAGAGTGGGTGATCTGCAGTCTCGCTATCACACCATGAAGCTGCGCGTGACAGCCGCCCAGAGTCGCCTCGGGAAGCTGCAGGATGGGGGCCAGTTGAGTGAGAATGAGATGGAGATGGAGACGCCCTCACTGCATCACATCAGACCTGCAGAAACGGTGATGAGAAACCATGAGCAGGACCTGCCGTCTGAAGATGAATCTGTTGCACAGTTTAAACAGCCCAAAAAGTCCATCGCAAAGAGGAAATGTGTAAGAAGCAATGCTGGAAGGAGGAAAAAGaagaaatgcttttaaaaaaaaaaactcaatgcgAGTTCACATCAAGCAAACGTGTCTTCAACACATTTTTGccaacatatttaaaacatttacgcTTGTGATATCAGCTTTTTTTACCAGGTAGAAGTTCTAAGTTCTAGAGAATTCCTCCTGCTCATAATTTTAAGAACTGAAAAGCTTTGAGGTGATTTCTTGTTTGGAGTCAATGAggaatatatttatttcactgaatGTACAAAATGAAATGCATGACACATCAGCTGCTTGTTATGGATCAAATAAACCACACTTCAGATCACTTAACATGAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-39 Orthologous to human HORMAD2 (HORMA domain containing 2).

Ensembl:

ensembl_id ENSDART00000053867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031834 lncRNA downstream 40311 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 57811 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 251564 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 363163 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 389410 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031841 lncRNA upstream 3068 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031852 lncRNA upstream 771716 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 976267 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 1298456 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 1383557 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00031836 mRNA downstream 26642 6051916 ~ 6065416 (-) True XLOC_016127
TCONS_00031835 mRNA downstream 40222 6042048 ~ 6051836 (-) True XLOC_016126
TCONS_00031831 mRNA downstream 52301 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031830 mRNA downstream 149703 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031829 mRNA downstream 149943 5933902 ~ 5942115 (-) False XLOC_016124
TCONS_00031838 mRNA upstream 343 6104378 ~ 6112862 (-) False XLOC_016129
TCONS_00031839 mRNA upstream 2456 6106491 ~ 6115688 (-) False XLOC_016129
TCONS_00031840 mRNA upstream 2602 6106637 ~ 6115389 (-) False XLOC_016129
TCONS_00031842 mRNA upstream 46820 6150855 ~ 6182098 (-) True XLOC_016130
TCONS_00031843 mRNA upstream 108170 6212205 ~ 6232517 (-) True XLOC_016131
TCONS_00031833 other downstream 46663 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 531039 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 1048208 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031799 other downstream 1107654 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 1166931 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031851 other upstream 662258 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 804627 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2530205 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2576907 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 3302523 9406558 ~ 9406675 (-) True XLOC_016169

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01305065_01310559.mRNA True 897 mRNA 0.48 10 CI01000004 1305065 ~ 1310559 (+)