RNA id: TCONS_00031838


Basic Information

Item Value
RNA id TCONS_00031838
length 3160
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_016129
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6104378 ~ 6115688 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGGCAGCTGGAAATGCACACATTGGGAAACCTGCTCCGGATTTCACAGCCAAAGCAGTGATGCCTGATGGACAGTTTGGAGATGTCCGTTTGTCTGACTACAAAGGGAAGTATGTGGTGCTGTTCTTCTATCCACTGGATTTCACCTTTGTCTGTCCCACTGAGATCATCGCCTTCAGTGATGCTGCCGAGGAGTTCAGGAAAATCAACTGCGAGATCATTGGTGCTTCTGTCGATTCCCACTTCTGCCATCTTGCCTGGACCAAAACACCCCGAAAACAAGGTGGTTTAGGACCAATGAATGTCCCTCTGGTGGCAGATACTCTCCGCTCCATTTCTAAAGACTACGGTGTACTTAAAGAAGATGAGGGTATTGCATACAGGGGTCTTTTCATTATTGACGACAAGGGCATTCTGCGGCAGATTACCATCAACGATCTGCCAGTCGGTCGCTCCATTGATGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGATAAGCATGGAGAAGtttgtcCAGCCGGATGGAAGCCTGGAAAAGACACTATTAAGCCCGATGTCAATCAGAGCAAAGACTTCTTCTCCAagcaaaattaaaactaaaaaaggCACTAGACTCTGCAGCATAGTATAATAGACAGAAGTGATGTGAATTAATGCTACTGGTTGGACTAGTACATCCATTTACAGGTGGTTATTCTTATTATATAGTGTTATATATTGTAAAGTTGTAGGACTAAAGTGTGTCAGACTACCTGAAATGTATTGAACCGTTTGAGTTGGTTTGTTCAACTTTGTCTTACCATTTAGTTTTGTGTGAAAAGAGATGTTTTATAGCGATGACCTTCTGACTACACTGTCAACAATTGCATTTCAAATAATAAACTCGTATTTTGTAAAAgctttattagtttatttgttaCCACTGTTtgatttgtaaacatttataaatcttcAGTGCTACATGTTTTTCTTGGTCTGTTGTTATCGGATGTGTTAAGAGTGtcgtaaagtaacaaattacaaacactctgtactactgtaattgagtagtttttttttctcagaaattgtagtttactaaagtagttttaatgtgtacttttactttcccttgagtacatttttaatgcagtATCGGTAAGTTTACTCCACCACTGTCCTTCATCCTGCAGTCATTACTTTATTTtctcttgtctatggggattagaagtCCAGTGactcctgtccaatcaaatcacacagaaggcaaatcgcatcataatgagctacctcaagacatgagcgCTTTATAATTGcaacaaactgtttggaagcattagaAGTGTCCAAAAAGGTGTTCTTCACACACATTAACCCAGAGACTATTTGGATGCATggcactgatgagaagatgacgaatGTTTATTGtttgaccattcattcattttctttgctgcttagtccctttttattaatttggggtcgccacagcggaatgaaccgaatgaacttatccagcatatgttttatgcagcggatgcccttccagctgcaacccatctctgggaaacatccatacacggttgtacactccggacaatttagcctgccctattcacctgtatcgcatgtgtttggactgtgggcgaaacccgagcacccagaggaaacccacaattgccaggagaacatgcaaactccacacaaacgccaattggcccagctgaggcttgaaccagtgaccttcttgctgtgaggcgacagcactacctactgtgccactgcgttgccccgtATGGTGACCCAAATGGatttaaacacccagcagacacggCGTCAACATGATGTTAGATTGGTGTTGTACCTCAACGTTGTGCGGgtgttgcattttatttggaaCTGAAAATCggtttgacgtcagaacccaacgtcaaaGTCCAACATggaacctaaaaccaaccaaataccaatgtctaatgatgttacagcttgatgttatgtggatgttaccactgtgatgtctatcagatattggattttggttgccatacctgatgaataaatctCAGTATTTGatatcaatatgatgttggtttaagattttggctctgttggattttggtcactttccaacacaaattAACATCAACCAagtatcaacatcatttgaagtttgacattattggacatcaaaataatgtacttaagacactggctagacattgaattttggtcacttgacatcacaatctaaattaacctaatattaacatcttaagacgttgtgtgcctgctgggcaataactaaaagcactacagaatgttacgcttgcacacacatccacaaattaagtaaatgcattagccttttacagcgtaatactctcTACACCTgggtacttttaaaaggtctacgttttactcatacttttgagtaatatttacaacaaatactctacttgcactacatcttTAAGCAGGTAAATGTGCTTTTACTTGATTTTTCAGTATTCTTTCTACCACTGGATGTGTTTGACCAAAATAAGCCGAACACCAGCTTTTAGTACTCTAATATCATCATGATATATCTCTTCAGCATAGAGTGATGTAAGTAGACTAGCATGCTAATATTCATGCATATGCTTATGTGTGAACCTGGGCCACTAAACCAGACAATAGCCCAAAacacattgtatgggtcaaaatcattgattttgtttttttttttttatgcttgaaataattagaatgattttttttactttttctaggGTAAATATGTCAACTTTTGGATGTAATATGTGCTTTTATGAACCTTTTACTTTCATCAGTATttgtagttttcttttttttaaccttcagattctagatttttaaaaagtcatatgTCTGTCTGCCAAATATTGTTCTAACAGTGTACACCAGTGAAAAGCTTTTTATTGAACTTTCagttgattaatttaattaattaatttccaaAAATTATGAaacatgactggttttgtggtcaagGTTCAGGTTGTGTCACTCCCAGAACCACCCCTTAGTTCAAGCATTTGAATTAGTGTGATAATTTATgtcttattttgatttattttcatatGTAAGGATGtctcattttacagtaaattaatgTTCATTTACACTGTGAGGAAATCTGACTATATTCGCA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0033554 cellular response to stress biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0045321 leukocyte activation biological_process
GO:0005829 cytosol cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function
GO:0008379 thioredoxin peroxidase activity molecular_function

KEGG:

id description
ko04146 Peroxisome
ko05146 Amoebiasis
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050320-35 Predicted to enable thioredoxin peroxidase activity. Acts upstream of or within leukocyte activation. Part of protein-containing complex. Is expressed in several structures, including diencephalon; digestive system; epidermis; lateral line; and otic vesicle. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human PRDX1 (peroxiredoxin 1).

Ensembl:

ensembl_id ENSDART00000164269

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031834 lncRNA downstream 52631 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 70131 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 263884 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 375483 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00033349 lncRNA downstream 401730 5701098 ~ 5702648 (-) True XLOC_016118
TCONS_00031852 lncRNA upstream 762889 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 967440 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 1289629 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 1374730 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033766 lncRNA upstream 1433824 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00031837 mRNA downstream 343 6092058 ~ 6104035 (-) True XLOC_016128
TCONS_00031836 mRNA downstream 38962 6051916 ~ 6065416 (-) True XLOC_016127
TCONS_00031835 mRNA downstream 52542 6042048 ~ 6051836 (-) True XLOC_016126
TCONS_00031831 mRNA downstream 64621 6005199 ~ 6039757 (-) False XLOC_016125
TCONS_00031830 mRNA downstream 162023 5936577 ~ 5942355 (-) True XLOC_016124
TCONS_00031842 mRNA upstream 37993 6150855 ~ 6182098 (-) True XLOC_016130
TCONS_00031843 mRNA upstream 99343 6212205 ~ 6232517 (-) True XLOC_016131
TCONS_00031844 mRNA upstream 148551 6261413 ~ 6262441 (-) True XLOC_016132
TCONS_00031845 mRNA upstream 152906 6265768 ~ 6292510 (-) True XLOC_016133
TCONS_00031846 mRNA upstream 208761 6321623 ~ 6373829 (-) True XLOC_016134
TCONS_00031833 other downstream 58983 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 543359 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 1060528 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031799 other downstream 1119974 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 1179251 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031851 other upstream 653431 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 795800 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2521378 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2568080 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 3293696 9406558 ~ 9406675 (-) True XLOC_016169

Expression Profile

//