RNA id: TCONS_00031844


Basic Information

Item Value
RNA id TCONS_00031844
length 1029
RNA type mRNA
GC content 0.46
exon number 1
gene id XLOC_016132
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6261413 ~ 6262441 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACATTTCACAATGGGACATTCAGGATCCAGGCACAAACCCGAAGCACGTATACTCCTCCTAGGACTGGACAATGCTGGGAAATCGACTCTTCTATACAAACTGAAATACGATGAGAACTTCCACACGGTTCCTACCATCGGATTCAACGTGGAGATGATCGAAGCCAAGAAGAACCGGGATAAAATCAGCCTGACCGTGTGGGACGTTGGAGGTCAGGCCAAGATGCGAGCGTTCTGGAGGAACTTTTACCAGGACACGGCTGGGATTGTGTTCGTCGTGGACTCCTCTGATGTTAAACGTCTGGACGAGGCCAAGGGCGTCCTGGAGCAGTCCCTAAGAAGCGAGCACCTCAGGGGGCTCCCGGTGGTGGTTCTTGCCAACAAGCAGGATATTGTAGGGGCTGCAACGGTAACCGAGATCACAGAGCAGTTTAACCTGAGAAAGAGCTGCAGTGACCGAGACTGGTTCATTCAGCCGTGTTCGGCTCTGACCGGAGCGGGTCTGGTGGACGGTTTCAGACGAATGGCACACCTGGTGAAAATGACACCCGACGACAATAACATCAAAGAGACCGTCAAGTATATAAGAGCTAAATCTGTTATACAAAAGAAGTAGCGCCTGTGGTCACTCATTAACCACTTTTATTGTAGGCTCAGTGCTGTCCTGACTACAGTGGGATGTAATTACAGTACGTGCAATCCTGAAGTGTTCAAAACATGCAATATGCTACCTTGACTTGCAAAATATCACTCAGAGATAGATTATTATAATGACCAAGGCTGAGTGAGATATAGTTTtataaagaaaaatgtctccattcTGCCAAAGTAAAATGTTTATCATGAATTATGACTGTAAAGTACTGTTCAGGGTCATGTGAAAGGATTCGATGAGAAACGAAGGGTGTTTTCACTCTTGGTTTGCTTTAACTGAATTGATTATGTCTGTATGGttcattttaagcaaaatattgacCAACAGCTGACCCggtaccacaaaaccagtcttaagtTGCCAATAAAATGG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-070705-288 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL14 (ADP ribosylation factor like GTPase 14).

Ensembl:

ensembl_id ENSDART00000092190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031841 lncRNA downstream 148548 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031834 lncRNA downstream 209666 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 227166 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 420919 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 532518 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031852 lncRNA upstream 613310 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031854 lncRNA upstream 817861 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 1140050 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 1225151 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033766 lncRNA upstream 1284245 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00031843 mRNA downstream 28896 6212205 ~ 6232517 (-) True XLOC_016131
TCONS_00031842 mRNA downstream 79315 6150855 ~ 6182098 (-) True XLOC_016130
TCONS_00031839 mRNA downstream 145725 6106491 ~ 6115688 (-) False XLOC_016129
TCONS_00031840 mRNA downstream 146024 6106637 ~ 6115389 (-) False XLOC_016129
TCONS_00031838 mRNA downstream 148551 6104378 ~ 6112862 (-) False XLOC_016129
TCONS_00031845 mRNA upstream 3327 6265768 ~ 6292510 (-) True XLOC_016133
TCONS_00031846 mRNA upstream 59182 6321623 ~ 6373829 (-) True XLOC_016134
TCONS_00031847 mRNA upstream 213126 6475567 ~ 6482240 (-) True XLOC_016135
TCONS_00031848 mRNA upstream 249058 6511499 ~ 6519017 (-) False XLOC_016136
TCONS_00031849 mRNA upstream 249336 6511777 ~ 6518785 (-) True XLOC_016136
TCONS_00031833 other downstream 216018 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 700394 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 1217563 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031799 other downstream 1277009 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031798 other downstream 1336286 4907796 ~ 4925127 (-) False XLOC_016107
TCONS_00031851 other upstream 503852 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031853 other upstream 646221 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031892 other upstream 2371799 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 2418501 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 3144117 9406558 ~ 9406675 (-) True XLOC_016169

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01228506_01230204.mRNA True 1139 mRNA 0.45 2 CI01000004 1228405 ~ 1230414 (+)