RNA id: TCONS_00031852


Basic Information

Item Value
RNA id TCONS_00031852
length 828
lncRNA type antisense
GC content 0.44
exon number 3
gene id XLOC_016139
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 6875751 ~ 6919316 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaagtcttgtgcTGCCCTGGTTAACACTATTGAGCTGTTCTCTACATTGCCTGCTTTCACGGTGCTTACTTTGTCTTGTTCTCTGACCTCGTCCTGCCAGCTGCCTGCCTTGTACCTCAGCCTGATTACCGACTCTGATCCTAGCtgcctgccttgaactctagcctggaTACAGACCTTGATATTCGCCGCCTGCCTCCATGCCTGAACATTCATACTGTGATTACCTGCCGTTACTCCTTCAACGTAACACtattgtgtttgatCAACAACCGGATTCATGTGGTGCGGACCAAGAAATGAAGGCAGGTCAAAGGCAGGTGTCCATGGAGAACTTGTGTTCAGCCATCAGCAGctttcataGCATCCCTGTCCCtagtggacacacacacaagagCCAAGAACTTATTTTGTGAAATGGAAAGCTGCAGGTCTCTGGAGCTTTGCTTCCTGTTCTCTAAAACAATGGAAAAGATGAAGTAGGAATTGTGAACTATAATGCTGTTTCTATTGAAATCAATGCTTCTCTGGAAATTGGCTCATTCATCAGAACAATTCAGCCGCACAATGTATAATCACGATAAGCAGATACTGACGTGAAGACCACATCGTTTTCTAGGTTAAAGATTGTATAATCCTAGTTATGATGCAACTTGTTGAATAGCTCATCAGTATTGAAACGAAATGTCTGTGTATGAGCTGAAAAGGACACATGATGCCAAACTAATGGTGCCAAGACCAGAGTGAAAAAGGTTTAAAGAGCTCCTTTTCTCACCTATAATTGGGTCACATGAAGATCGATATTGAATAAAGAACCCTTGAGtcgtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153158

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031841 lncRNA downstream 762886 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031834 lncRNA downstream 824004 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 841504 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 1035257 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033764 lncRNA downstream 1146856 5726738 ~ 5728895 (-) True XLOC_016120
TCONS_00031854 lncRNA upstream 160986 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033765 lncRNA upstream 483175 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 568276 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033766 lncRNA upstream 627370 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00033767 lncRNA upstream 996035 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00031850 mRNA downstream 326913 6535865 ~ 6548838 (-) True XLOC_016137
TCONS_00031848 mRNA downstream 356734 6511499 ~ 6519017 (-) False XLOC_016136
TCONS_00031849 mRNA downstream 356966 6511777 ~ 6518785 (-) True XLOC_016136
TCONS_00031847 mRNA downstream 393511 6475567 ~ 6482240 (-) True XLOC_016135
TCONS_00031846 mRNA downstream 501922 6321623 ~ 6373829 (-) True XLOC_016134
TCONS_00031855 mRNA upstream 201266 7120582 ~ 7131657 (-) False XLOC_016142
TCONS_00031856 mRNA upstream 203921 7123237 ~ 7131691 (-) True XLOC_016142
TCONS_00031857 mRNA upstream 230272 7149588 ~ 7189594 (-) False XLOC_016143
TCONS_00031858 mRNA upstream 235812 7155128 ~ 7185460 (-) True XLOC_016143
TCONS_00031859 mRNA upstream 319233 7238549 ~ 7246848 (-) False XLOC_016144
TCONS_00031851 other downstream 109344 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 830356 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 1314732 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 1831901 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031799 other downstream 1891347 4942960 ~ 4984404 (-) False XLOC_016107
TCONS_00031892 other upstream 1714924 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 1761626 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 2487242 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 2610172 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 2768739 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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