RNA id: TCONS_00031854


Basic Information

Item Value
RNA id TCONS_00031854
length 346
lncRNA type antisense
GC content 0.39
exon number 2
gene id XLOC_016141
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7080302 ~ 7080925 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tacactgtaaaaaaaatctgtaaaataacagttaaattactgtatattttaacgGATTTTTTCCGTATACACGTATTACGGTTGTTTTtccgtttatatacattttcgaattgcattatgggaaggGGATCGCAGCTCAGGCAGCGTTTGATGGACACCGGGACATATTTCTTCCTCTGTTTTTTCCCTGttgtTTGTCCGTATTTTTTTAAACTGCCGTGCGCGGGAAGTGATGTGACGTCCCAATCACCCTCTCACTCCCTCTGCACCTGCGTGAGTCTGACTGGATTAACGATAAACGTCAGCTTGTCAGTGAGAGTGTAAAaggtatgttaattattttata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142206

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031852 lncRNA downstream 160986 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031841 lncRNA downstream 967437 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031834 lncRNA downstream 1028555 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 1046055 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031828 lncRNA downstream 1239808 5838896 ~ 5840494 (-) True XLOC_016123
TCONS_00033765 lncRNA upstream 321566 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 406667 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033766 lncRNA upstream 465761 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00033767 lncRNA upstream 834426 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033769 lncRNA upstream 1409663 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031850 mRNA downstream 531464 6535865 ~ 6548838 (-) True XLOC_016137
TCONS_00031848 mRNA downstream 561285 6511499 ~ 6519017 (-) False XLOC_016136
TCONS_00031849 mRNA downstream 561517 6511777 ~ 6518785 (-) True XLOC_016136
TCONS_00031847 mRNA downstream 598062 6475567 ~ 6482240 (-) True XLOC_016135
TCONS_00031846 mRNA downstream 706473 6321623 ~ 6373829 (-) True XLOC_016134
TCONS_00031855 mRNA upstream 39657 7120582 ~ 7131657 (-) False XLOC_016142
TCONS_00031856 mRNA upstream 42312 7123237 ~ 7131691 (-) True XLOC_016142
TCONS_00031857 mRNA upstream 68663 7149588 ~ 7189594 (-) False XLOC_016143
TCONS_00031858 mRNA upstream 74203 7155128 ~ 7185460 (-) True XLOC_016143
TCONS_00031859 mRNA upstream 157624 7238549 ~ 7246848 (-) False XLOC_016144
TCONS_00031853 other downstream 171621 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 313895 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 1034907 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 1519283 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 2036452 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 1553315 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 1600017 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 2325633 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 2448563 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 2607130 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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