RNA id: TCONS_00031855


Basic Information

Item Value
RNA id TCONS_00031855
length 3774
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_016142
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7120582 ~ 7131691 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGGTTCACTTGTGCTGTTGCAGGTCATTGGGCCGCGTGCGAACACACGTCGTCATCGGgtttatcctgctgctgcttctggcTGGAGTCTCTCTGACCTTTTTACTGCCCAACAATGAAGACATCAATATTCTCCGAGAGCTCCGACGAAGCTCCAACACCTCACGAACCCTGGCGGACCCAGAGGAGAGCTTTACTATAATTATGCAGACCTACAACCGCACCGATGTTCTCCTGAGGCTCCTCAACCATTACCAGGCAGTTCCTCACCTGCAGTGCATCATTATAGTGTGGAACAACCCAGGAGAAACGCCACCCAGGAGGCTGTGGGACGAGCTTGGCCCTCATCCTGTGCCCGTCCTCTTCAGGGAGCAGAGAGTCAACAGAATGCGCAACCGACTGATGATGCACCCCGATGTCAAGACTGATGCTGTTTTGATGCTGGACGATGACATATTGCTGAGTGTTCCTGATATCAGCTTCGCATTTTCTGTCTGGAAGcaaTTCCCAGATCAGATTGTGGGATTTGTTCCACGGAAGCATGTAAGCTCTGCATCTGGTGTTTACAGCTATGGCAGCTTTGAGCTTCAGGATCCTGACAAAGGTGGAGGAGACAGGTATTCAATGATCCTGGTGGGAGCTTCGTTCTTTCATCGCCGCTTCCTGAAGCAGTTCCAGGAGCAGCCTGCTGAAGTGCACACCCTGCTGGACCGAACGCAGAACTGTGACGACATCGCCATGAACTTTATCGTGGCCCGTCAACTTTCAAAGCGGCCCTCCGGGGTGTTTGTGAAGCCAGTGCATATGAGTAATCTAGAGAAGGACGCTAGTAGCGGGTTTGTTGGCATGTGGCATCGACCGGAGCACATGCTGCAGCGCTCCTACTGCCTCAACAAACTCGCACAGATCTACGGACACATGCCGCTCCGATACTCCAACATCATGATCACTCAGTTGGGCTTCCCAAGCTATGCTAATCACAAGAGCAGGATGTGATGTCGGCATATTTGAGAAGCAGATAACTATGAagcatttcaacatttttttaaatgtttacttgATATTAActtgcaaattataaataaaatgtcagcATAAGTTTTTTGtgacaataaattatttttgttgtttgtttttcattttattatgaagATTTTGCTTTTAAGATCCAGAATTTCATTCCGTTTCACTCTAAGAAAAAAGTGACCATTGTTTTCTTTGATTATATTGGGATCCTGACTGCTTTCTAAGcaaatttggggattttttttattgtaataataaccTATGAACAGAAGTTCAACCAATCACTTTAAGTTAATTACGCATtaccaaaaatgtacttaaaggtCACCCATTTTGtctctttttcaagatttaagagaagtcttttgtgtctccaggatGTGTCTAAAGTTTCTGCTtgaaacacccatcagattatttatcataGCATGCAGAACATtaggattttctgctctgaacacactgTAGCTGTATTTTTTGTCTGTGtctttgggtgctttcacacctgccttatttagttcgattgaatcgcactagagtttgttttcccttttggtgcggttcgtttgggcaggtgagaatgcagcaatcgtactcgagtgcgcaccaaaagcggactaaataagcgtaccgagacgtgcttgaagaggtggtctcggtacgctttcaaacgaaccgtggagcggttcgattgtggtgagaatatgatccgaactaaaacaggtccaaaagtactgcgccttttagTCTAATTCATctgccgtaggctgatgcgctgtgcattatgggatgtggaggaaaaatatttgttgacagcgctttaccagagagagaggggaaaacattacctgatggatcgttggtaatatttccgcaagatgagcatgtcgcagtttagctaaattaattcacgtctcctgctgaagtgacgagcgatgcattaaacactgttttccagccgcagccgtgcttcattctcgaaatgtatagtttgtctaaagcagggatacaatcagtcagcgcagtcgtccctccatagtaaaaagcgacaaTTTATGTCTGccagttttgtttacctgcgggagttcattggcattttcccgcacgtgaattccgaccaatcaataagcagtttatgaaatatgttcaacaacatctggccaatgagagatgtggattttgtcagatgactgcattttggttcgtttcaactggttcggacacaagccagcagtgtggtgtgaaaacgacccaaagacggcagaagatgcaacaatgtatcatttattacccttggtgcggaccaaatgaagccaactacagatgtgaaagcacccttaatgctAGCTCTCCCCGCCTACCATTCCCTCgagcctgtcagagtgtgcctcaatctctggctGCATACATtggataaacagcacagtgacagacataaaggaagcagatcttgcgtaacgtttgtgagaaatactacagtaagaactttccaattgttgttgttattattatttgatgtgtttgttgaGGAGTTGCAACTATGAggcacacacaatgtcattacaaagttctcgtattcacacagacacacgtttttgcatggcaaatgtgacaggatacacgttaatatccactgctctaAGGACATCCGTTTTGTTAATGTACAAATATACCTggtttaacgtccacaaaccgggattgaagctactttttataattgtactaacACGCGATAAAGACGGTAAAACCACTGTAATccattacaaacatgcaccgttttaaaaccgttttaaacttgtaaaactcatttttgatcacatttgatgatgattgatgatcacagagcgctgaacagatcttttaatcttagTTGCTTTGTGCACGCCCTGTCTTGTTGAtgattaagctgcggtcacactagagtttgtgtgttcgatattctgtcatgcggcgctgtgaaaaggggcgggattaaacaagcttattagacatttaaaaaagcgagcgattgctcaatgttgtaaatttctgtccagagaggtcatgttttgatcctcggttggtctcatgcagtcaagtgatgcgatttcgcaggtcagagttcaccaagcttgaactttgcaccacagcaacctgcgaaacttgacgcatgactctgcgtttccggtctgatgcattcgcgtgcgtatgaatggaagtctataggaggaaaagcccagtgtggcCGCAGCTTTATAcgtgttactacagagacatattaatacacagctgtcaatcaatttggtgggtggggaaaccgcatTTAAAATGGAAGgtatttgaatcctattttaacgtcaggaaattaaaaaaacgagacttattgtgtttctagcactccaatatgactgtggacacactatacccacacacagttctgtccaaacagcttacaaaagctGATTTTCACCATTTCTTTAAAGTAATGAATGTGATTTGAGTGTACGCTAAACAGAAACCagataaaatctttttttgacaGTGGCTACATTTGAAAAActcattaaagaagattttctgTGCCGATAATGCAACAATATACTTTCCGTGCCAAGGTATACTTCCTGAGCACAAATCGTTTCATCTCCTCAGTAAAAACATGGATCAAAGTGAAAGAAATATCAACATAACTTCTATAATGTTTGTTGAAAGTTTTTAGTAACACAAGAGATTACACAGTAAAACTGTTTGATGAATTAGCTTGCA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-060929-1122 Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).

Ensembl:

ensembl_id ENSDART00000175565

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031854 lncRNA downstream 39657 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031852 lncRNA downstream 201266 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031841 lncRNA downstream 1007717 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031834 lncRNA downstream 1068835 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 1086335 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00033765 lncRNA upstream 270834 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031863 lncRNA upstream 355935 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033766 lncRNA upstream 415029 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00033767 lncRNA upstream 783694 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033769 lncRNA upstream 1358931 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031850 mRNA downstream 571744 6535865 ~ 6548838 (-) True XLOC_016137
TCONS_00031848 mRNA downstream 601565 6511499 ~ 6519017 (-) False XLOC_016136
TCONS_00031849 mRNA downstream 601797 6511777 ~ 6518785 (-) True XLOC_016136
TCONS_00031847 mRNA downstream 638342 6475567 ~ 6482240 (-) True XLOC_016135
TCONS_00031846 mRNA downstream 746753 6321623 ~ 6373829 (-) True XLOC_016134
TCONS_00031857 mRNA upstream 17931 7149588 ~ 7189594 (-) False XLOC_016143
TCONS_00031858 mRNA upstream 23471 7155128 ~ 7185460 (-) True XLOC_016143
TCONS_00031859 mRNA upstream 106892 7238549 ~ 7246848 (-) False XLOC_016144
TCONS_00031860 mRNA upstream 110154 7241811 ~ 7246338 (-) True XLOC_016144
TCONS_00031861 mRNA upstream 156440 7288097 ~ 7289403 (-) True XLOC_016145
TCONS_00031853 other downstream 211901 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 354175 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 1075187 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 1559563 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 2076732 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 1502583 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 1549285 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 2274901 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 2397831 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 2556398 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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