Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031857 |
| length | 9300 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 19 |
| gene id | XLOC_016143 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 7149588 ~ 7189594 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0010608 | posttranscriptional regulation of gene expression | biological_process |
| GO:0050863 | regulation of T cell activation | biological_process |
| GO:0042129 | regulation of T cell proliferation | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0043488 | regulation of mRNA stability | biological_process |
| GO:0000288 | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | biological_process |
| GO:0010494 | cytoplasmic stress granule | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0035613 | RNA stem-loop binding | molecular_function |
| GO:0003725 | double-stranded RNA binding | molecular_function |
| GO:0003729 | mRNA binding | molecular_function |
| GO:0003730 | mRNA 3'-UTR binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-79 | Predicted to enable RNA binding activity and ubiquitin protein ligase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within posttranscriptional regulation of gene expression and regulation of T cell proliferation. Predicted to be located in P-body. Predicted to be active in cytoplasmic stress granule. Orthologous to human RC3H1 (ring finger and CCCH-type domains 1). |
| ensembl_id | ENSDART00000139703 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00031854 | lncRNA | downstream | 68663 | 7080302 ~ 7080925 (-) | True | XLOC_016141 |
| TCONS_00031852 | lncRNA | downstream | 230272 | 6875751 ~ 6919316 (-) | True | XLOC_016139 |
| TCONS_00031841 | lncRNA | downstream | 1036723 | 6107103 ~ 6112865 (-) | True | XLOC_016129 |
| TCONS_00031834 | lncRNA | downstream | 1097841 | 6042039 ~ 6051747 (-) | False | XLOC_016126 |
| TCONS_00031832 | lncRNA | downstream | 1115341 | 6029581 ~ 6034247 (-) | True | XLOC_016125 |
| TCONS_00033765 | lncRNA | upstream | 212897 | 7402491 ~ 7422437 (-) | False | XLOC_016146 |
| TCONS_00031863 | lncRNA | upstream | 297998 | 7487592 ~ 7494464 (-) | True | XLOC_016147 |
| TCONS_00033766 | lncRNA | upstream | 357092 | 7546686 ~ 7548019 (-) | True | XLOC_016148 |
| TCONS_00033767 | lncRNA | upstream | 725757 | 7915351 ~ 7916387 (-) | True | XLOC_016156 |
| TCONS_00033769 | lncRNA | upstream | 1300994 | 8490588 ~ 8494716 (-) | False | XLOC_016159 |
| TCONS_00031856 | mRNA | downstream | 17897 | 7123237 ~ 7131691 (-) | True | XLOC_016142 |
| TCONS_00031855 | mRNA | downstream | 17931 | 7120582 ~ 7131657 (-) | False | XLOC_016142 |
| TCONS_00031850 | mRNA | downstream | 600750 | 6535865 ~ 6548838 (-) | True | XLOC_016137 |
| TCONS_00031848 | mRNA | downstream | 630571 | 6511499 ~ 6519017 (-) | False | XLOC_016136 |
| TCONS_00031849 | mRNA | downstream | 630803 | 6511777 ~ 6518785 (-) | True | XLOC_016136 |
| TCONS_00031859 | mRNA | upstream | 48955 | 7238549 ~ 7246848 (-) | False | XLOC_016144 |
| TCONS_00031860 | mRNA | upstream | 52217 | 7241811 ~ 7246338 (-) | True | XLOC_016144 |
| TCONS_00031861 | mRNA | upstream | 98503 | 7288097 ~ 7289403 (-) | True | XLOC_016145 |
| TCONS_00031862 | mRNA | upstream | 230392 | 7419986 ~ 7431590 (-) | True | XLOC_016146 |
| TCONS_00031864 | mRNA | upstream | 412402 | 7601996 ~ 7605121 (-) | True | XLOC_016149 |
| TCONS_00031853 | other | downstream | 240907 | 6908662 ~ 6908681 (-) | True | XLOC_016140 |
| TCONS_00031851 | other | downstream | 383181 | 6766293 ~ 6766407 (-) | True | XLOC_016138 |
| TCONS_00031833 | other | downstream | 1104193 | 6042039 ~ 6045395 (-) | False | XLOC_016126 |
| TCONS_00031821 | other | downstream | 1588569 | 5554665 ~ 5561019 (-) | False | XLOC_016117 |
| TCONS_00031800 | other | downstream | 2105738 | 5040167 ~ 5043850 (-) | False | XLOC_016107 |
| TCONS_00031892 | other | upstream | 1444646 | 8634240 ~ 8635132 (-) | True | XLOC_016162 |
| TCONS_00031895 | other | upstream | 1491348 | 8680942 ~ 8684933 (-) | True | XLOC_016164 |
| TCONS_00031900 | other | upstream | 2216964 | 9406558 ~ 9406675 (-) | True | XLOC_016169 |
| TCONS_00031903 | other | upstream | 2339894 | 9529488 ~ 9544161 (-) | False | XLOC_016171 |
| TCONS_00031909 | other | upstream | 2498461 | 9688055 ~ 9688185 (-) | True | XLOC_016176 |
