RNA id: TCONS_00033765


Basic Information

Item Value
RNA id TCONS_00033765
length 598
lncRNA type read_through
GC content 0.35
exon number 2
gene id XLOC_016146
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7402491 ~ 7431590 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaaattagccactaaatctaaaagttacgaattgctgtgagattgcgttggaggTTCAGGCAGTGAGAATCAACATCATCATTgctgtttaattaaatattttacattgctgtaaaaattaaatatttaaaaataaaaacatttcacaattagGATCCATTTgataacattaacattaactaacattaattaaaacCGTATTATAAAGTACTACAGTAGCATTTTATTGAGAAATACTTTCAGAACCTCCATAAGAGAACCACTGCAATGTATCGTACACGCCACTCTGCAGCAGCAGAATTTACCTCCATGTTTGCACACCCTAATACTGCAATGTAGCATGACATGGATCATACATGACATTTAACTGTGTACAATCGATGTGAACTTCCATACGACTCGAGTTATTCGCTCTCTCTGTGCACCATGACACTATTGTGACTCCTTTGCCAGCTGGAGATGTTATTAAAGTGAACTCTTGTAGGATTCACGCTGGCAAAGTTTAGGTTTTGTTATTACTCTCGATATTTTTCAAACCTTGTAAAGCGAGGAGCATATCTACAGTTAAGTAGACCTGTGTAGAGATGCTtaaaattg

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098657 import into cell biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0055085 transmembrane transport biological_process
GO:0140115 export across plasma membrane biological_process
GO:0023061 signal release biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051648 vesicle localization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko04080 Neuroactive ligand-receptor interaction
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031854 lncRNA downstream 321566 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031852 lncRNA downstream 483175 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031841 lncRNA downstream 1289626 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00031834 lncRNA downstream 1350744 6042039 ~ 6051747 (-) False XLOC_016126
TCONS_00031832 lncRNA downstream 1368244 6029581 ~ 6034247 (-) True XLOC_016125
TCONS_00031863 lncRNA upstream 65155 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033766 lncRNA upstream 124249 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00033767 lncRNA upstream 492914 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033769 lncRNA upstream 1068151 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033768 lncRNA upstream 1068151 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031861 mRNA downstream 113088 7288097 ~ 7289403 (-) True XLOC_016145
TCONS_00031859 mRNA downstream 155643 7238549 ~ 7246848 (-) False XLOC_016144
TCONS_00031860 mRNA downstream 156153 7241811 ~ 7246338 (-) True XLOC_016144
TCONS_00031857 mRNA downstream 212897 7149588 ~ 7189594 (-) False XLOC_016143
TCONS_00031858 mRNA downstream 217031 7155128 ~ 7185460 (-) True XLOC_016143
TCONS_00031864 mRNA upstream 179559 7601996 ~ 7605121 (-) True XLOC_016149
TCONS_00031865 mRNA upstream 241505 7663942 ~ 7666021 (-) True XLOC_016150
TCONS_00031866 mRNA upstream 246136 7668573 ~ 7696287 (-) False XLOC_016151
TCONS_00031867 mRNA upstream 246136 7668573 ~ 7696503 (-) True XLOC_016151
TCONS_00031868 mRNA upstream 276009 7698446 ~ 7711522 (-) True XLOC_016152
TCONS_00031853 other downstream 493810 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 636084 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 1357096 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 1841472 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 2358641 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 1211803 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 1258505 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 1984121 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 2107051 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 2265618 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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