RNA id: TCONS_00033766


Basic Information

Item Value
RNA id TCONS_00033766
length 1334
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id XLOC_016148
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7546686 ~ 7548019 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCAGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgaggtattattttattatttatgtaactttattttgttggtgcttttttaaatcatagttaaaatgtaactattttagtgtatattatcTTGCTTTCTTCTAAGCAACATATCTTTTTAAAAAAGGGGCATGGTTATTGCAAGCACACCCAACTTCATGTATTAACAAAAACATGTTGGTTAACGTCAGACTAAACAGTCTTTCTTTCAGATGGATATACCTATCATCCGTCAGTGGTGGTGCCTTCTACTCATGGAACAATTTCAAACTGATGGGTatgtcagtatttatttatttttcttgtaaatctgtaaaattaaaaatttatattgtgTCAATACAACAACTTGTAACATGAATAACAAAACATACTTAAAATCTCTCTTACCAGTGACCAgtatgtcaccgactcggtcccagtaactcccctcgctggccagcagaggccaccatctccggacttttagcattacgtcatccatctacactgattgcgcatacacctgattggaatctggctaatgacccacgtacctcttataagccgcactcaaacactcgttCAGgtcgaagtcttgtttagccccggccagcatttctgagcatgatctccagcctgatctcctgtgcacgactccagcctgtctcttactttgcttcgcattctgcctgcccacgacccatgcttgttatacggactctgactctctctctgcctgcccacgaaccacgcctgttatacggactctgatccttgctgcctgcccttgacccaagcctgCATAACAGATCCTGGTTCTCGCTCACTCCCTTccactcatgcctggtaactcactctgtgtctgttcatcatcagtcttgatacccatactactactgtggatgtgtgtgtgcactccggtgcatattgtgtgtttgagtgaagttgtgattaataaatattgcataatggatccctccgtgtcagtctccacgTTACACAGTAATTATGGATTTTGTCTTGTCTTGTTATTAAAAGCTATGGGCACAGATTTGCTTTCTGGACTGAGAAGGCAAGAAGTGTCTTGGATGGAAAAATTCTGCTCCTTTTTAGGGTGAAAAGAAAAACCACATCCAATCTTCCGGCACATGTCCAAGCAGTTCAAGATTGGGAAAGGAATGACAAAAGATTAGTGGACTTGATTATCACATCAAAATCACCAGAGCAGCATTTGGTGGTATAGATGGTTCCACTTTAAATTACTCCTCTAGACTCTGAGTATGGTTGACTTAAATATAGTCAAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031863 lncRNA downstream 52222 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033765 lncRNA downstream 124249 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031854 lncRNA downstream 465761 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031852 lncRNA downstream 627370 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00031841 lncRNA downstream 1433821 6107103 ~ 6112865 (-) True XLOC_016129
TCONS_00033767 lncRNA upstream 367332 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033769 lncRNA upstream 942569 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033768 lncRNA upstream 942569 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033770 lncRNA upstream 942569 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031876 lncRNA upstream 942569 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031862 mRNA downstream 115096 7419986 ~ 7431590 (-) True XLOC_016146
TCONS_00031861 mRNA downstream 257283 7288097 ~ 7289403 (-) True XLOC_016145
TCONS_00031859 mRNA downstream 299838 7238549 ~ 7246848 (-) False XLOC_016144
TCONS_00031860 mRNA downstream 300348 7241811 ~ 7246338 (-) True XLOC_016144
TCONS_00031858 mRNA downstream 361226 7155128 ~ 7185460 (-) True XLOC_016143
TCONS_00031864 mRNA upstream 53977 7601996 ~ 7605121 (-) True XLOC_016149
TCONS_00031865 mRNA upstream 115923 7663942 ~ 7666021 (-) True XLOC_016150
TCONS_00031866 mRNA upstream 120554 7668573 ~ 7696287 (-) False XLOC_016151
TCONS_00031867 mRNA upstream 120554 7668573 ~ 7696503 (-) True XLOC_016151
TCONS_00031868 mRNA upstream 150427 7698446 ~ 7711522 (-) True XLOC_016152
TCONS_00031853 other downstream 638005 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 780279 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 1501291 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 1985667 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 2502836 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 1086221 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 1132923 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 1858539 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 1981469 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 2140036 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

//