RNA id: TCONS_00031867


Basic Information

Item Value
RNA id TCONS_00031867
length 2647
RNA type mRNA
GC content 0.47
exon number 16
gene id XLOC_016151
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7668573 ~ 7696503 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCAGCGCTCTGTTAGAAGAAGTAGGTTGGGACGCGGATTTTGCTATCCCTGTTGCTAATGCAGAAAACAAAGCATTAGAGGAGCAGATTCGAAAGAAGCAAAAAGACATATTAAACCTTgacaacaaactgaataaacacaaAGATGTTATAAATGCTTTGACTGAACATCTCAAAAATCTCAAGCAAGAGGTTTCACACAATCAGGCTTTGTGCAAAGCCAAAGAGAAGGAGACCGAATCGGAAGTGCATTTGAAAGCGCTGGCGGAGCGAGAGACAGGCCGCTTGAAGCAAGAGATCACTCGGCTGGAGAGTCAACTGACAACACTGAATGAGAAGAAGAATGCACAAGAGAACAGCATCTTTAAAGCCACCCAGAAGATCGATGAACTGACGAGTCAGCTGAACTGGGATCAGCAGACCCTGGAGGCCTTTTTGCAGGAATCAGCACACAAGGATGAAGACACCATGGCTATCATCAAGTATGCCAAGCAAGACGAGAGGAAGATTAAAGAGTTGACTCTGAACATTGAGAAGCTGACTCTTGAATCGAACCAGAAGAGAAAAACTTTGGACAATGAACTCACTGAGACTGTTACATCACAGATAGCTTTGGACAAGACAGCTGAGAGCTTTCGTCAGGCTCACACGGAAAGACAAGAACTGATCAGCCAGTGGGAGAACACCATTGAACAAATGAGGAAAAGAGACCAGGATATACAGCAGTGTGCCATGATGCTGGCAGAGTTGAACCaaacaataagagagaagaaTGATTTGATCAAGGAGAGGAAGGACTTCTTGGAGCGTGAGATAGAGAACAATAAGGAGCTGGAGAGGAATATAGGCACTGTTGAGCGTCAAGCATTTCGACTCAGGCAACAGCTTCAGGAAGAGGAGAAGAACCAAAGGCGACTGCAGGATGAGGTGGAGGTTCTGAAGGGAACTGTAGACCGAACTGCCACAGATGTGGAGACCAGCAGATCTCAGTTATCCAGCATGAAAAAAGACATTCAGGACAAAACAACAAAAGTTGAAGAGGCACAGCTGCATAATGCTGCTCTGGAGGAGAAGCTGCGGATGGTGACGGAGGCGGTGCTGAATGGTGAAGAGCAAGCAGCACAGATGGAGCAGCTGCTCAGAGAACAAGAGCAGAACATCAAAGAGATTGATTCTCAGCTGCTTCGTCAGAAAGAGCTCTTGTTCAAGAAGAGTCAGGAGGTGCAGGCATTGCGTGATAAAGAGAAGAACGTCACGGCTGAGATCTGTGCCACCCGGACCGCTCTGTCCAACCTAGACAGTAAACTCCGCAAGCTGGACCAGAACTTCCTCCAGCAGCAGATGATCATCTCCAACCAGGACTTTCAGATTCAGATGCTGGAGAGGAAGACTTTACACTTGCAAGGGAAGGTGAACACAGAGGAGAAGAAAGCGCTGGAGAAGAAGGTCGCAGATCTGGCTGCATCTCTAGAGGAGAAGAAGAAGACCGCTGCCAACCTCAACAAACAGCTGAAGAAACTGCAGGATGATATTCGCTGCATTAAGAAAGACACCGAGAAGATCGGAGCAGAGAAGACAAACTTGAGCACTAAGATCCAGGAGGTGGAACTCTTCATTGAGACCTCtgaaaaagagaggaaaaaaagcaGGCTTAAAAAACAGGACAGTATGGTGGAGAAGGGTCTCCTGAAGATGGAAGTGCAGCGGTTGAGGAATCTGCTGTATGACCGAGCAGATGGAGTGCTGACCCTGGAGAAGAGGCGTCTGCAGCTGCAAACAGccatgaaagagagagaggaggagATCCGTGTGCACAGAGAGATGCTCAATAAACAGGTCAAGCTCACTGAACAGGAAAGACAAGGACTCAGTGCTGCGGTGAATGAGGCTATGTCCAAAATTGACAAGCAGAGGAAGCGGTATGAGGTCCTGAGTGTTTCCTTGGCTCCACCTGAGGGAGAAGAGGATAAATCCCAGGCCTACTTTATCATAAAGGCAGCTCAAGAGAAAGAAGAACTGCAGCGTAAGGGGGACGAGTTAGATGCCAAAATCCGAAAAACAGAGAAAGAGATCCATGCTCTGGAGAACACGCTTCAAGTTGTCAACAACTGCAATTCAACCCACCGCAAAGCCCTGACCAAAGTCACCGAATCCAGTCCTGCACACCAGGAGAAGCTGAAGCTGGAGGAGCAGAGGCGAGCAGCCGAGGAGAAATACAAATATAAGAGACGGCAGACCCAAGAACTGCAGGAGGACATTGAAGTAAATATTTGTGTTGATGTCAACTGTGCTCCAGAAAATCAGATGTACAATGCATTacaatagggctgtgcaatattgaAGAAAAGTGTGCTAATTTTATAAAGGAAAACGATGAAATCCATAGCAATATTTCAGTTTGTAGCATTTTTAGCATATAAGGAAGGCTAGTGTGGTTCTGGTTAGTAAAGAAATCAGTTCAGAAAGTCCTCTGAAGAGCAGCTAATCTCATTATTAGTTTACCCcttctgaaaaatccagcttaaaccagcctaggctggttggctggttttagctggtcgaccaggctggttttagaggggttttggccatttccaggctagtTTCTTGCTATTtccagctggtcaggctggaaaatgaccag

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0070286 axonemal dynein complex assembly biological_process
GO:0036159 inner dynein arm assembly biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-110603-1 Involved in cilium-dependent cell motility and epithelial cilium movement involved in determination of left/right asymmetry. Acts upstream of or within determination of left/right symmetry. Located in extracellular region. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain containing 39).

Ensembl:

ensembl_id ENSDART00000169709

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033766 lncRNA downstream 120554 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00031863 lncRNA downstream 174109 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033765 lncRNA downstream 246136 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031854 lncRNA downstream 587648 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031852 lncRNA downstream 749257 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00033767 lncRNA upstream 218848 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033769 lncRNA upstream 794085 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033768 lncRNA upstream 794085 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033770 lncRNA upstream 794085 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031876 lncRNA upstream 794085 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031865 mRNA downstream 2552 7663942 ~ 7666021 (-) True XLOC_016150
TCONS_00031864 mRNA downstream 63452 7601996 ~ 7605121 (-) True XLOC_016149
TCONS_00031862 mRNA downstream 236983 7419986 ~ 7431590 (-) True XLOC_016146
TCONS_00031861 mRNA downstream 379170 7288097 ~ 7289403 (-) True XLOC_016145
TCONS_00031860 mRNA downstream 422235 7241811 ~ 7246338 (-) True XLOC_016144
TCONS_00031868 mRNA upstream 1943 7698446 ~ 7711522 (-) True XLOC_016152
TCONS_00031869 mRNA upstream 52891 7749394 ~ 7757273 (-) True XLOC_016153
TCONS_00031870 mRNA upstream 68168 7764671 ~ 7800702 (-) True XLOC_016154
TCONS_00031871 mRNA upstream 135411 7831914 ~ 7845110 (-) False XLOC_016155
TCONS_00031872 mRNA upstream 135588 7832091 ~ 7843451 (-) True XLOC_016155
TCONS_00031853 other downstream 759892 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 902166 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 1623178 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 2107554 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 2624723 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 937737 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 984439 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 1710055 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 1832985 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 1991552 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_00318181_00339002.mRNA True 4602 mRNA 0.40 19 CI01000004 317234 ~ 340020 (+)