RNA id: TCONS_00031868


Basic Information

Item Value
RNA id TCONS_00031868
length 1618
RNA type mRNA
GC content 0.39
exon number 7
gene id XLOC_016152
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 7698446 ~ 7711522 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCACTGCGCATGAGCGGAAATAGGTACAGTGCAGAGAGGGATAGCGGAAGAGGGAGTCTGGAAATCACAAACATgAACAAGCTGAAATCCTCTCAGAAGGATAAAGTTCGCCAGTTCATGATCTTTACCCAGTCAAACGAGAAAACAGCACTCAATTGTTTGTCTCAGAATGATTGGAAACTAGACGTTGCTACAGACAACTTTTTCCAACATCCCGACCTCTACGTACAGAATCTAAAGGGAACACTAGACCGCAAAAAGTTAGAACAGCTCTATAATCGGTACAGAGACCCTCAAGATGACAACAAGATCGGTATAGATGGGATCCAGCAATTCTGTGATGATTTAGGACTTGATCCAGCCAGTATAAGTGTACTGCTAATCGCTTGGAAGTTTCGAGCCGCAACACAGTGCGAGTTTTCCAAACAAGAATTCATGGAGGGAATGGCTGAACAAGGGTGTGACAGCATAGAAAAACTCAAGGCACAGCTACCCAGGATGGAGCAAGAGTTGAAGGATCAAGGGAAATTTAAAGACTTCTATCAGTTCACATTTAACTTTGCTAAGAATCCAGGACAGAAGGGCTTAGACCTAGAAATGGCAATTGCATACTGGAATTTAATATTGGCTGGACGTTTTAAATTTCTAGATCTATGGAACAAATTTTTATTGGAGCATCATAAGCGATCCATTCCCAAAGACACATGGAACCTTTTGTTAGATTTCAGCACGATGATCACAGATGATATGTCAAACTACGACGAGGAGGGAGCCTGGCCAGTTCTTATTGATGATTTTGTGGAGTTTGCGCGGCCGTGCATCGGCACCAAGAGTACAGCTGTATGAGTACATTCCTTCAGAGGGACTTCTGGACCTCATTGAAAACAAACAGCTTCTGCTGAGCACAGAAGACTGAACTGAGATCTGCATTGCCTTTTCCAAGCCCTCAGGACTGAGACATTTATACAAACCAGAGACATTAAAGGCGTCTTTTCTCTTCAGTCATCTAATGGTGGTTTGGGCTTTTGTCTTTTTGGGCCATTTTTGTTTTCTCTTCGTACAGGATTGTATTGAATCTGGCACTTCTTCAGTGGTCTCATTCAGATGAAGCGGTTTGTTGAGCAAGCTCCGACAGATACAGTTAGGAAATGTCAAAACCTTAATTTTAATAACTCCATGTGCATTCTCGctttgaatgtttgtttgtttttttctttccatttggtttTTATGAAAATTATATGTCAAGCGTTGTTTGAttgttctctttctctctttttttttataaaacagagAAGCTGGTGTCTTGAAAACCAGTCACATTTAACTTGTTTTATTGTGACGATGTACATTTTCTGTTGATATCCAGACAGTAACTTCAGCTTTGCGCGTTTGGTTTTGATTAAATCAATAGGTCATAActgaaaatgttatattttacaatcgtagaaataatattaattttgaaCCATACCTCAGTTTTCCTTGATTAATGACTCCATTTTGATGTATTGATATACTGTGTTTGCAGTTCATTCAGCACTTTGATAAGTCACATAATCCATATCATATAATCAGGTTATAGTTGATGAATAAAGTCAGATGGCcttgaaaa

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0097602 cullin family protein binding molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0032182 ubiquitin-like protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5443 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D1 (defective in cullin neddylation 1 domain containing 1).

Ensembl:

ensembl_id ENSDART00000163175

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033766 lncRNA downstream 150427 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00031863 lncRNA downstream 203982 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033765 lncRNA downstream 276009 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031854 lncRNA downstream 617521 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00031852 lncRNA downstream 779130 6875751 ~ 6919316 (-) True XLOC_016139
TCONS_00033767 lncRNA upstream 203829 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033769 lncRNA upstream 779066 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033768 lncRNA upstream 779066 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033770 lncRNA upstream 779066 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031876 lncRNA upstream 779066 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031867 mRNA downstream 1943 7668573 ~ 7696503 (-) True XLOC_016151
TCONS_00031866 mRNA downstream 2159 7668573 ~ 7696287 (-) False XLOC_016151
TCONS_00031865 mRNA downstream 32425 7663942 ~ 7666021 (-) True XLOC_016150
TCONS_00031864 mRNA downstream 93325 7601996 ~ 7605121 (-) True XLOC_016149
TCONS_00031862 mRNA downstream 266856 7419986 ~ 7431590 (-) True XLOC_016146
TCONS_00031869 mRNA upstream 37872 7749394 ~ 7757273 (-) True XLOC_016153
TCONS_00031870 mRNA upstream 53149 7764671 ~ 7800702 (-) True XLOC_016154
TCONS_00031871 mRNA upstream 120392 7831914 ~ 7845110 (-) False XLOC_016155
TCONS_00031872 mRNA upstream 120569 7832091 ~ 7843451 (-) True XLOC_016155
TCONS_00031873 mRNA upstream 212442 7923964 ~ 8017579 (-) True XLOC_016157
TCONS_00031853 other downstream 789765 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 932039 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 1653051 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 2137427 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 2654596 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 922718 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 969420 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 1695036 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 1817966 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 1976533 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_00311036_00314134.mRNA True 2049 mRNA 0.35 6 CI01000004 309804 ~ 314134 (+)