RNA id: TCONS_00031875


Basic Information

Item Value
RNA id TCONS_00031875
length 3185
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_016158
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8059957 ~ 8111346 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCCACGTACACGGTAAAAGACGACAGACGCCACTGCAAAGCACTCGACAGGAATATCTGCATCTTTTCTTAGTTAATCTTACGAAAAGTCAACAACGTTTTGGAGGAAGGACCCTTTTTGCATGGTGTGAAGTGCTTCGAGGAGACCAGCATGGAGAACAAAGTCACGCAGATCTCTCGAGAAGATCTGGAGGACCTGAGAGAAGCTTTCAACAAGATTGATATCGATAACAGTGGCTACGTGAGTGATTTTGAGCTTCAAGAGCTCTTTCGTGAAGCCAGCTTTCACCTCCCGGGATACCAGATACGGGAGATTGTAGAGAAGTTCATTGCCGGTGACACCAACAAAGATGAGAAGATCAGTTTCGAAGAGTTTGTTGCCATATCCCAAGAGCTGAGAAGTAAAGAAGTGAGAGAAACATTCCGCAAGTGTATCTCCAGGCGGGATGGGATTCGGTCGTTTGGTGGGACATCAGGTATCTCGAGTGAAGGAACGCAGCATTCCTACTCAGATGAAGAAAAGGTGGCCTTTGTGAACTGGGTCAATAAAGCTTTGGCAAACGATCCCGACTGCAAACATCTGATCCCGATGGACCCTGGGACTGACAGTTTATTCAAATCTGTGAAAGATGGAATTTTGCTGTGTAAAATGATTAACCTGTCACAGCCAGACACCATCGATGAGCGGGTCATCAACAAGAAATGCACTCCATTCACAATGACTGAGAATTTGATGTTGGCGCTCAACTCTGCTTCTGCGATCGGCTGTACGGTGGTCAACATCGACGCGCAGGACATGAAAGCCGGGACCCCTCACCTTGTGCTCGGCCTCTTGTGGCAAATCATAAAAATCGGCCTCTTCGCTGACATTGAGATCTCTCGCAACGAAGcgctAATTGCTTTGCTGGATGAGTCAGAAGAGCTGGACCACCTTATGTCAATGTCCCCTGAGGACCTTTTGCTTCGGTGGGTCAACTATCACCTCAAAGCTGCTGGATGGAAACAGATCAGAAACTTCAGTGAAGATATCAAGGACTCCAGGGCGTATTTCCACCTGCTTAATCAGATCTCACCCAAAGGAGACTTGGATGACCAGATGAGGATTGACATTGACATGTTAGGACTCACCGAGCGTGATGATGAGATGCGAGCAGAGCTGATGTTGAGGCAGGCGGCTCGTCTGGACTGCAGACAGTTTGTCACTCCCAAGGACGTGGTTGCAGGAAACCATAAGCTCAACATGGCGTTCGTGGCCAATCTTTTCAACATGTACCCAGCCTTGAACAGACCCACCGACAACGGCATTGATTATGCGATCGAGGGGGAAACGAGAGAGGACAGAACATTCAGGAACTGGATGAATTCTCTGGGGGTCTCTCCATACGTTAATCACCTGTACAGtgatctgcacgACGGCCTCATCATTCTTCAGTTATATGAGAGAATCCAGATACCGGTTGACTGGCCTAGAGTCAACAAACCTCCCTACCCTGTACTCGGCTCCAACATGAAGAAGCTTGAGAATTGCAATTATGCGGTCGCACTGGGCAAAAAGGAAGCAAAGTTTTCCTTGGTAGGAATCGGCGGTGAGAATATCAATGAGGGAAGCCCCATGCACACGCTGGCACTGGTCTGGCAACTAATGAGAAGATACACACTGAAGGTTCTGTCTGATCTTGGTGATGGGGAAAAAGTCAGTGACCAAATAATAATCAACTGGGTGAACAGCACTCTGAAACAAGGCGATAAAAACTCCTCCATTAGCAGCTTCAAGGACAAATCGATCAGCACAAGCCTGCCAGTGATTGATCTGATCGACACCATTGTGCCCAAAGCCATTAAATACGAGATGGTGAAGAGCGGCGACATGACGGCAGAGGACAAGCTAAACAATGCAAAATATGCAATCTCTGTGGCGCGAAAAATAGGAGTCAAGGTGTACGCCCTGCCCGATGACCTTGTGGAGGTCAAACCCAAGATGGTGATGACGGTGTTCGCGTGCCTTATGGGAAGAGGCTTGAAGAAAGTTGACGGCTGACCTTTATGAAGGACTCTTGTCAGAAACACACAACCCTCACGTTGCACTTTTCCTCCTCCTGACTTCCATTTATTGCTTTAAAGTGAATATGTTGTTTTCGAATCAATGTAGAGTCTTCACTTCTCCTGTTAGGATAACTTCAGACAGGACCAAGTAGTGACCTTAAAATTTAGGAAATGtggttctctaattttgatctccactgtagACATAGCCTCAATCCCCATGACTGTGTTTcgcaaccacattcctggaggaccaccaacactggaTGTTCTGGATGTCTCTTTCAACTTTCACacctattacaggtctttcagtctctgcaaatgagctaatgatctgaatcaggtgtgtttggttaagaagatatggaaaatgtgcgGAGTTGGTGGTCCTCTggaaacatggttgagaaacactgctttaaggcaaattgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttcctcagACATTTGTCTTTCATGACAAGCTTCTATTTAGGGGTTAGTTCATACAAAAATTCTCCCcacatgtcattccaaaccttgAGACAAACGTTGAAGATTCGTCACAACGCATCAACACAAACTAGATGAAATCTTAGAGCGCTCGAATCCTCCATAGACTATCACTACATGTTTTTGGAGATTTGTATAATTATAGTTGAAAAACTGAAGTCACATGAAAAGttctgacaatgtttttggttccttctctggactttgaacatcacGAAACCTTTTCTGTGTCTATGGatgatgagggagctctcaaatcatctaaaatatcttaacttgCGTTCTGAGGATGAACCAAGATCTCACAGGATTGGAATGGCATCAGTGTGTGTAATCAataacagagttttcatttttggctgaactaactCTTTAAGCGCATCTCAAAATGTCTTGCAGAATCTGCTTGCAGATGTAAGATTATTGAAAGGCAGTACCTGTTTTCTTGAAAACTGTgactattttttttccatttctcattaAAATGATTCCTTTTGAGCCAGATTGTAAATAGTTGGATATTTTTAACGATACATAAATAAAGATGCCCACCAGAACTATTTGAGCCATGCA

Function

GO:

id name namespace
GO:0051017 actin filament bundle assembly biological_process
GO:0051639 actin filament network formation biological_process
GO:0005884 actin filament cellular_component
GO:0032432 actin filament bundle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-6205 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Predicted to be active in actin filament; actin filament bundle; and cytoplasm. Is expressed in macrophage; otic vesicle; pronephros; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 76. Orthologous to human PLS1 (plastin 1).

Ensembl:

ensembl_id ENSDART00000131955

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033767 lncRNA downstream 144388 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033766 lncRNA downstream 512756 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00031863 lncRNA downstream 566311 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033765 lncRNA downstream 638338 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031854 lncRNA downstream 979850 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033769 lncRNA upstream 388419 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033768 lncRNA upstream 388419 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033770 lncRNA upstream 388419 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031876 lncRNA upstream 388419 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031877 lncRNA upstream 388421 8490590 ~ 8493222 (-) False XLOC_016159
TCONS_00031873 mRNA downstream 43196 7923964 ~ 8017579 (-) True XLOC_016157
TCONS_00031871 mRNA downstream 215665 7831914 ~ 7845110 (-) False XLOC_016155
TCONS_00031872 mRNA downstream 217324 7832091 ~ 7843451 (-) True XLOC_016155
TCONS_00031870 mRNA downstream 260073 7764671 ~ 7800702 (-) True XLOC_016154
TCONS_00031869 mRNA downstream 303502 7749394 ~ 7757273 (-) True XLOC_016153
TCONS_00031888 mRNA upstream 484246 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031887 mRNA upstream 484246 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031886 mRNA upstream 484246 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031889 mRNA upstream 484784 8586953 ~ 8611675 (-) True XLOC_016160
TCONS_00031890 mRNA upstream 515647 8617816 ~ 8636175 (-) False XLOC_016161
TCONS_00031853 other downstream 1152094 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 1294368 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 2015380 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 2499756 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 3016925 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 532071 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 578773 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 1304389 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 1427319 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 1585886 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_00098017_00119297.mRNA True 2391 mRNA 0.44 16 CI01000004 98017 ~ 119618 (+)
bowfin (Amia calva) AMCG00014489 True 3075 mRNA 0.48 24 CM030128.1 15630190 ~ 15654845 (+)