RNA id: TCONS_00031885


Basic Information

Item Value
RNA id TCONS_00031885
length 2941
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_016159
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8490588 ~ 8494716 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacgttctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacaaactttttaaaacctgatttacgcctattatcacagttttcttattttaaaaatatgtaatttttattttgtttatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatattttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctaataaaactttgattcattcatattatttattatttttttactttaaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggagtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCCCCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatgtgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgtttatgacaaacattaaaaaactacagCATAAGCTCACAAAATATTGTGGCCTAACTGTTTAAAACTAATTGTTCTGGGTGGTGATAGTggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacattttttttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCATTGTTTCCATTAGTTCCTGTATCTGTAGACCTAGGTGACAGTGGGCTAGagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaatatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTTCTGCTTTCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTGATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTGAATAGTATTGTGATTTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTACAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTTGTCATATTGCATGGTATGGACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctggtcaggattcttcaggagaagcagtggattcttgtggcagagatgttcaaccactataaatac

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0034720 histone H3-K4 demethylation biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0072148 epithelial cell fate commitment biological_process
GO:0060429 epithelium development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0060485 mesenchyme development biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0021510 spinal cord development biological_process
GO:0021517 ventral spinal cord development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033767 lncRNA downstream 574657 7915351 ~ 7916387 (-) True XLOC_016156
TCONS_00033766 lncRNA downstream 943025 7546686 ~ 7548019 (-) True XLOC_016148
TCONS_00031863 lncRNA downstream 996580 7487592 ~ 7494464 (-) True XLOC_016147
TCONS_00033765 lncRNA downstream 1068607 7402491 ~ 7422437 (-) False XLOC_016146
TCONS_00031854 lncRNA downstream 1410119 7080302 ~ 7080925 (-) True XLOC_016141
TCONS_00033774 lncRNA upstream 341206 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00033775 lncRNA upstream 835530 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033351 lncRNA upstream 1251721 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 1251721 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 1251721 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00031874 mRNA downstream 379698 8059957 ~ 8111346 (-) False XLOC_016158
TCONS_00031875 mRNA downstream 388875 8060775 ~ 8102169 (-) True XLOC_016158
TCONS_00031873 mRNA downstream 473465 7923964 ~ 8017579 (-) True XLOC_016157
TCONS_00031871 mRNA downstream 645934 7831914 ~ 7845110 (-) False XLOC_016155
TCONS_00031872 mRNA downstream 647593 7832091 ~ 7843451 (-) True XLOC_016155
TCONS_00031888 mRNA upstream 91699 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031887 mRNA upstream 91699 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031886 mRNA upstream 91699 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031889 mRNA upstream 92237 8586953 ~ 8611675 (-) True XLOC_016160
TCONS_00031890 mRNA upstream 123100 8617816 ~ 8636175 (-) False XLOC_016161
TCONS_00031853 other downstream 1582363 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 1724637 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 2445649 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 2930025 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 3447194 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 139524 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 186226 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 911842 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 1034772 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 1193339 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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