RNA id: TCONS_00031889


Basic Information

Item Value
RNA id TCONS_00031889
length 1620
RNA type mRNA
GC content 0.39
exon number 10
gene id XLOC_016160
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8586415 ~ 8611675 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATACCGAAACATAAAGCATTTAGAGTAATAACTGCCGGATTGTTTTCCTCTTTCGTTTTTGTAAGGGGTGTGTTCGCGAGCATATGTTTCCCGGGAAGGAAACAGTGAGGCAGATAAAGAGCGAGGAGAAAACTGTGTGACCGTCGCCCATTAAATGActgaaacaagtaaataaaaagtactaACCGACAGCCTTAGGAGAGGATATTGGTGGGGAATATCAAATTAAAGAACAAGACGAGACGGCATCCTCTTTAAATAGAGCACTTTGCTGCTTTTCACCATGGAAACCAACAATGCAGGCTACCCAGTTGAGCTTCAaccaaataaaaatgcaattcacCCTGCCCCTGGATATGGTCAAGGAGCCGCCATACCAGGCCATGGTCAAGTGGTTATGATGCCAGTTCCACAGAGACCTGATGGCTGTCCACCAGGACTGGAGTACCTGACTCAGATCGATCAACTTCTAGTGCAGCAGAAAGTTGAGCTGGCTGAAgTTATCTTGGGCTGGGAGACCAATAACAAATACATTGTCAAGAACAGTATGGGGCAGCAGGTGTTCTATGTGGCTGAGGAAAACGACTGCTGCAACAGACAGTTCTGTGGGCCGCTGCGCTCTTTCGTTATCCATGTTCAGGATAACTTGGGACAGGAAGTGATGAGACTTATGCGTCCTTTGAAGTGTGGAAGCTGCTTCTGCCCCTGTTGCCTCCAGGAGCTTGAAATCCAAAGTCCACCAGGCTACCCGATTGGATACGTGATCCAGAATTGGCATCCATTCCTTCCCAAATTTACCATTCAGAATGAGAAAAAAGAAGCTGTTTTGAAGATTGAAGGACCGTTCTGTTCATGCAGATGTTGTTCGGATGTGAACTTTGATGTTTTGTCTTTAGATGAATCCACAAAGGTGGGCAAAATTTCTAAACAGTGGACAGGTCTGGTGAGAGAAGCTTTCACAGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGATGTGAAGATCAAAGCTGTGCTTTTTGGAGCATGTTTCCTCATAGACTTCATGTTCTTTGAACACAATAAATGAGTGATCATTCTTTGGATGCCATATTGAATTTTGACCTTCTTGTTTGTGATGTCCTTGATACACCACTAGGTGACAGCAATTGCCTTTACAATAACGCTAGGATCTTAACATCAACAAAGAACCAACTCTGTGAAAGGATTTGCCAAACTGTCAATGTTCAAGATATGTTATACAATATAGGCCAAGTTGTAACAAGCAAgttgccattcattcattttggttCCTTTTTTCATATGTAGTTTACTGGCCAGTGCTcataatgtttaatataatataatccatGCTACACTGAAAAAGTGGTAACCTAAAAACTAAATTAACCAAttgtatcatatcatattatatatagaCTAAGTATATTCTTCCTCAAGTATTGAaaagataagaaaaaaataagaaatatttaagGTAATATATGTTAAGTAAACACTGTTTGCATTCAGTGTATTGATAGATGATTATAGGTGATGAAAGTTATAATCAAAcattttattctgtaaaaaaaaactgtgaacaaacacaataaatatatacaaatatcc

Function

GO:

id name namespace
GO:0017121 plasma membrane phospholipid scrambling biological_process
GO:0044782 cilium organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017128 phospholipid scramblase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-193 Predicted to enable phospholipid scramblase activity. Acts upstream of or within cilium assembly. Located in cytoplasm. Orthologous to human PLSCR1 (phospholipid scramblase 1); PLSCR2 (phospholipid scramblase 2); and PLSCR5 (phospholipid scramblase family member 5).

Ensembl:

ensembl_id ENSDART00000138223

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033772 lncRNA downstream 92237 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033773 lncRNA downstream 92237 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031885 lncRNA downstream 92237 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031884 lncRNA downstream 92242 8491044 ~ 8494711 (-) False XLOC_016159
TCONS_00031883 lncRNA downstream 92814 8491405 ~ 8494139 (-) True XLOC_016159
TCONS_00033774 lncRNA upstream 224247 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00033775 lncRNA upstream 718571 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033351 lncRNA upstream 1134762 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 1134762 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 1134762 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00031874 mRNA downstream 475607 8059957 ~ 8111346 (-) False XLOC_016158
TCONS_00031875 mRNA downstream 484784 8060775 ~ 8102169 (-) True XLOC_016158
TCONS_00031873 mRNA downstream 569374 7923964 ~ 8017579 (-) True XLOC_016157
TCONS_00031871 mRNA downstream 741843 7831914 ~ 7845110 (-) False XLOC_016155
TCONS_00031872 mRNA downstream 743502 7832091 ~ 7843451 (-) True XLOC_016155
TCONS_00031890 mRNA upstream 6141 8617816 ~ 8636175 (-) False XLOC_016161
TCONS_00031891 mRNA upstream 6144 8617819 ~ 8631805 (-) True XLOC_016161
TCONS_00031893 mRNA upstream 32747 8644422 ~ 8648440 (-) True XLOC_016163
TCONS_00031894 mRNA upstream 51433 8663108 ~ 8688759 (-) False XLOC_016164
TCONS_00031896 mRNA upstream 234165 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031853 other downstream 1678272 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 1820546 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 2541558 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 3025934 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 3543103 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 22565 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 69267 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 794883 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 917813 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 1076380 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_02551541_02556812.mRNA True 558 mRNA 0.46 4 CI01000003 2551541 ~ 2556836 (+)