RNA id: TCONS_00031891


Basic Information

Item Value
RNA id TCONS_00031891
length 738
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_016161
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8617816 ~ 8636175 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACAATCACTGGTAGGCCTACTAAATGTTATGTGGCGCCTCAGGTACCGGCAGTTATGCCAGTCTTGGACAGACCCATGGGCTGTCCTGTTGGTCTAGAGTACCTAACCCAGGTTGACCAGCTTCTAGTTCATCAGAAAGTGGAACTAATGGAAGTACTCATGGGATGGGAGACCAATAATCAATATGTGGTGAAAAACAGTTTAGGGCAGCAGGTGTTTTTTGCCGCTGAGGAGAGCCATTTTTGCAGTCGTATGTTTTGTGGATCTGTGCGTTCCTTCCTGCTACATATCCAGGATAACATGGGACAGGAAGTGATGACTTTATCTCGTCCCCTTAAGTGCAGTAGTTGCTTCTTCCCTTGCTGTCTTCAAGAGCTGGAGGTTCATAGCCCTTCAGGCAGCCCTCTTGGTTATGTTACACAAAGCTGGCATCCTTATCTGCCAAAGTTTATCATTCATAATGAGAGAAAAGAACCAGTTCTGAAGATTTTGGGACCGTTTTGTGACTGCAAATGTTGTTCTGATGTTAATTTTGAGGTGATGTCACTGGATGAGTCCTCAGTGATTGGTCGAATTAGCAAACAGTGGTCGGGATTTGAGGCAGAAGCTTTTACGGATGCAGACAACTTTGGCCTACAATTTCCAATGGATTTGGATgtgaaaataaaagcagttatattGGGAGCCTGCTTTCTTATCGATTTCATGTTTTTTGAGCACACTCAAAAACAAGAG

Function

GO:

id name namespace
GO:0017121 plasma membrane phospholipid scrambling biological_process
GO:0005886 plasma membrane cellular_component
GO:0017128 phospholipid scramblase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130531-65 Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDART00000126806

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033772 lncRNA downstream 123103 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033773 lncRNA downstream 123103 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031885 lncRNA downstream 123103 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031884 lncRNA downstream 123108 8491044 ~ 8494711 (-) False XLOC_016159
TCONS_00031883 lncRNA downstream 123680 8491405 ~ 8494139 (-) True XLOC_016159
TCONS_00033774 lncRNA upstream 204117 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00033775 lncRNA upstream 698441 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033351 lncRNA upstream 1114632 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 1114632 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 1114632 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00031889 mRNA downstream 6144 8586953 ~ 8611675 (-) True XLOC_016160
TCONS_00031888 mRNA downstream 8166 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031887 mRNA downstream 8166 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031886 mRNA downstream 8166 8586415 ~ 8609653 (-) False XLOC_016160
TCONS_00031875 mRNA downstream 515650 8060775 ~ 8102169 (-) True XLOC_016158
TCONS_00031893 mRNA upstream 12617 8644422 ~ 8648440 (-) True XLOC_016163
TCONS_00031894 mRNA upstream 31303 8663108 ~ 8688759 (-) False XLOC_016164
TCONS_00031896 mRNA upstream 214035 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031897 mRNA upstream 529142 9160947 ~ 9259283 (-) False XLOC_016167
TCONS_00031898 mRNA upstream 529142 9160947 ~ 9260002 (-) True XLOC_016167
TCONS_00031853 other downstream 1709138 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 1851412 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 2572424 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031821 other downstream 3056800 5554665 ~ 5561019 (-) False XLOC_016117
TCONS_00031800 other downstream 3573969 5040167 ~ 5043850 (-) False XLOC_016107
TCONS_00031892 other upstream 2435 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031895 other upstream 49137 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031900 other upstream 774753 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 897683 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 1056250 9688055 ~ 9688185 (-) True XLOC_016176

Expression Profile

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