RNA id: TCONS_00033774


Basic Information

Item Value
RNA id TCONS_00033774
length 1543
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id XLOC_016165
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 8835922 ~ 8840884 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGACTTCTCACATACTTTTATTTCCACAGTTCTCCTCTAACAattttttgtacattatttaAGAACAGATTGTTATACACAGATACTGAAGCAGGTCAAGGGAGGGGAGGTGAATAGAACAGAACCCATTACAAAATGGTCTACTTAAAGCACAACAAAATGCATGTGTATAAAAGAACAGGGCAGCAGCGCGCGTGTGCGACGGCTGCCCCCAACTCGattctcatttgtttttgtttttttttcatcgtcttttttaaatagattaataaaaatacaatctttTCATGGACTGTGAGGAAACTGCGAAAATTAGAGGGATCTAAAGGCGTGATGATGGCTGGGCAAACGACTGCCACGAGTTCTTCATTTTCTTCTAAAACAAGTGGCCAGGTTTGAATCAAGTGGACAGGAAAgggggaagagaaaaaaaaatggcacACGGCAACTACCACTGGCTACTTTTCACCATATATTTGAATACTCCACATGTTCAACGACAGTACACAttgagagaaaagaaaagaaagctcTCCACGTGTGCAGAGAGTGCAAGAACGCCGTCCGGATCTCAGCTGGTCTTCTCCGTGCTGTAGTGCTTCAAGGTAAGTGGAGTGGgttgttttctttctttgaaatcgccatttaaaaaacaagaaatgaatgtaaataaagTGACAACATCATGTAACGGTTGTAAGAGGAAATAAAGAGCAGCTTCTAGTGAAAATGGTAGCCCATGgcaagagacacacacacacacacacacacacacacaaaccgggTCTGTCTGTCAGCTAGGATTTTTTCCCCCCCGTTCAGAACGTCGGAATTGCGAACGAACCTCCGTGATTGGTTCAAAACCTGGTATGAATCAAAGACATCAGCACCAAGTTCCTTTCCTTGCATCACAAAAAGAGCTCAAGCACAAATCTGGACTTATAAATATTTCAACTACAGACGACATTTTGCACTTTATCTTGAGCCTCTCTTCAGAATTCAGCTCCTCGGAGACGTTCCTCTCTGACAGCCGTCACTCAGGCGGCAGAACAAAGGGAGACACATCGGGTTGCCTTCGAAATGTCCTGGGATTGGGAATGTCGGTGTGCCttttcgttcattcgttcgtgcGTTCTTCTCACTTCTTTTGATTTGAGATAGTGTTACTTGACGAGACCTGGTAAGGTTTGACACCCACGGCTGGGTGTTGCCCCCTCCCTCCCACAAACCctcccccaccccacccccctcTGGCAGCGGTTCGGGGCGAGGTGCGGCCCGTCTGCGGTACCCTCTCGCCCAGACGTAAGCATTTCTTGACTTGGATGATGGAGCCATGCACAGAATGCCCTGGGGGCTGCAGGCCAGCCCTGAATAGTAGCGCTGGAGCTTGTCCCTGTCATCTGTTGGCAGGGAAGTAGTTGGGGTCCAGGTAGTTATAGCCTGTGCTTTGCGGTAAGCAGTAGTCTTTGTCCAGGAAGGTTTCGGCCTGGCAAACCGTCAGAGCAGGTACTGCAGAAGTCCACGGCGTTGTCCTGCG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033769 lncRNA downstream 341206 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033768 lncRNA downstream 341206 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033770 lncRNA downstream 341206 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00031876 lncRNA downstream 341206 8490588 ~ 8494716 (-) False XLOC_016159
TCONS_00033772 lncRNA downstream 341206 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033775 lncRNA upstream 489362 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033351 lncRNA upstream 905553 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 905553 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 905553 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00033776 lncRNA upstream 905553 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00031894 mRNA downstream 147163 8663108 ~ 8688759 (-) False XLOC_016164
TCONS_00031893 mRNA downstream 187482 8644422 ~ 8648440 (-) True XLOC_016163
TCONS_00031890 mRNA downstream 199747 8617816 ~ 8636175 (-) False XLOC_016161
TCONS_00031891 mRNA downstream 204117 8617819 ~ 8631805 (-) True XLOC_016161
TCONS_00031889 mRNA downstream 224247 8586953 ~ 8611675 (-) True XLOC_016160
TCONS_00031896 mRNA upstream 4956 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031897 mRNA upstream 320063 9160947 ~ 9259283 (-) False XLOC_016167
TCONS_00031898 mRNA upstream 320063 9160947 ~ 9260002 (-) True XLOC_016167
TCONS_00031899 mRNA upstream 489262 9330146 ~ 9489611 (-) False XLOC_016168
TCONS_00031901 mRNA upstream 672276 9513160 ~ 9527210 (-) False XLOC_016170
TCONS_00031895 other downstream 150989 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031892 other downstream 200790 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031853 other downstream 1927241 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 2069515 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 2790527 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031900 other upstream 565674 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031903 other upstream 688604 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 847171 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031914 other upstream 905974 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031915 other upstream 906418 9747302 ~ 9747431 (-) True XLOC_016178

Expression Profile

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