RNA id: TCONS_00033775


Basic Information

Item Value
RNA id TCONS_00033775
length 1419
lncRNA type sense_over
GC content 0.46
exon number 5
gene id XLOC_016168
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9330146 ~ 9489611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGGCTCTGGAAAAAGAAGTCAGTGATAGTTACCAGCCTTATCGTGGTGGTGTCTCTGTTTTTGGTGGTGATTAACTGTTCGGAGAAACCCTACTTCCTACTGCAGCCTGTATTCGGCCAAAGCTTCAGCAGAAACTGGATGTTCTCTCGTCCACCACACAAAGCCTCCAAACCTCACCACGGCTATCTCAGCGTTCCTAACCTGGAGCCGCTGAAGCTGCATTGTGAGGTCTGCAGTGTAGTGTCCAGCTCTGGCCAGATATTGGGACGTGAGGCAGGGGCTGACATTGACCAGTCCTCTTGCATATGGAGAATGAACAATGCACCCACCCGGGGCTTTGAGAGGGATGTGGGACACAGGACAGACCTGAGGGTTGTGTCTCACACAAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTCGGACAGGGGAATGAGACCGTCTATGTGGTCTGGGGACCACTGCGCAACATGAGGCAGGATGGGAAAGGCATTGTTTACAACATGCTGCGACAAGCGGTTGAAAACTACCCACAGGCTCGCATTTACGTCACCACAGAAGAGCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAGACCGGCAAAGACAGGATTCAGTCGGGGTCGTACCTGAGCACTGGTTGGTTCACGCTTATTCTGGCAATGGACATGTGCAAGGAGATTCGAGTCTACGGCATGATCAATGACACATACTGCAAaTCAGAAGGCTACAAGAAGGTGCCATACCACTACTATGAAGCAGGGAGCCGTGACGAATGTGCAGAATACCTCCTCCATGAGAGTGCTCCTTACGGCGGCCATCGCTTTATCACTGAAAAGGCAGTTTTTGCAAAGTGGGCTAAGACGCACCCCATCAAATTTTTCAGTCCGGAGTGGCAGCTGTCGTGACCCAGACTCCCATTCTTTCCGAAAATTCCCTAGCGCTACCACCCTGTTGGCTAGTTCCCACTTCATCACAATGTAAACACAAACTTGCTGTGCAGTGGCAAACAAATCATTCCGATTTGTGATTTCAAACTGCAGTTTTCTGAGGAAAGTAACTACCCTACACCATAAGGAAACATCTAACCACATTTATCGAAACTGATGTCGATTGTTGCATGTTCTTATTTTGTTCTCACCTGGAAAGTCAagtagttaaacattttttcaggGGCACATCAACGAAAACACATTACAAACTTGTTCAATCTTTTATCACTTCAAATGTATTCACATTAGGGCTGGCTGATATTCCAAATTGTAAAAAAGTATATTTCGGCATTTCGattatttttctgtttatataACTTGGTCTAAAATGGCTTATAGGGCATTCTGCgtctaaaataaattacaatagaataaaacaatgtaaaagcaGTGCAGTGGAAGGCAAAAATGCGCTCT

Function

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0001574 ganglioside biosynthetic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033774 lncRNA downstream 489362 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00033772 lncRNA downstream 835530 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033773 lncRNA downstream 835530 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031885 lncRNA downstream 835530 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031884 lncRNA downstream 835535 8491044 ~ 8494711 (-) False XLOC_016159
TCONS_00033351 lncRNA upstream 327349 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 327349 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 327349 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00033776 lncRNA upstream 327349 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00033778 lncRNA upstream 327349 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031898 mRNA downstream 70244 9160947 ~ 9260002 (-) True XLOC_016167
TCONS_00031897 mRNA downstream 70963 9160947 ~ 9259283 (-) False XLOC_016167
TCONS_00031896 mRNA downstream 270291 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031894 mRNA downstream 641487 8663108 ~ 8688759 (-) False XLOC_016164
TCONS_00031893 mRNA downstream 681806 8644422 ~ 8648440 (-) True XLOC_016163
TCONS_00031901 mRNA upstream 94072 9513160 ~ 9527210 (-) False XLOC_016170
TCONS_00031902 mRNA upstream 99214 9518302 ~ 9527129 (-) True XLOC_016170
TCONS_00031904 mRNA upstream 110435 9529523 ~ 9544161 (-) True XLOC_016171
TCONS_00031905 mRNA upstream 173231 9592319 ~ 9607879 (-) True XLOC_016172
TCONS_00031906 mRNA upstream 202201 9621289 ~ 9625548 (-) True XLOC_016173
TCONS_00031895 other downstream 645313 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031892 other downstream 695114 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031853 other downstream 2421565 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 2563839 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 3284851 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031903 other upstream 110400 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 268967 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031914 other upstream 327770 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031915 other upstream 328214 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031958 other upstream 1485974 10905062 ~ 10905179 (-) True XLOC_016199

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_02070747_02072861.mRNA True 1002 mRNA 0.48 2 CI01000003 2070747 ~ 2073389 (+)