RNA id: TCONS_00031900


Basic Information

Item Value
RNA id TCONS_00031900
length 118
RNA type rRNA
GC content 0.48
exon number 1
gene id XLOC_016169
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9406558 ~ 9406675 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACACAGCCATATcactctgcagcccaagactggttactcactgaagctaagcagggctgagcctggtcattaCCTGGATGGTAGCCCATATGGAAAAAACTAGATTGCCATttgaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000116777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033774 lncRNA downstream 565674 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00033772 lncRNA downstream 911842 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033773 lncRNA downstream 911842 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031885 lncRNA downstream 911842 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00031884 lncRNA downstream 911847 8491044 ~ 8494711 (-) False XLOC_016159
TCONS_00033351 lncRNA upstream 339762 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 339762 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 339762 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00033776 lncRNA upstream 339762 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00033778 lncRNA upstream 339762 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031898 mRNA downstream 146556 9160947 ~ 9260002 (-) True XLOC_016167
TCONS_00031897 mRNA downstream 147275 9160947 ~ 9259283 (-) False XLOC_016167
TCONS_00031896 mRNA downstream 346603 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031894 mRNA downstream 717799 8663108 ~ 8688759 (-) False XLOC_016164
TCONS_00031893 mRNA downstream 758118 8644422 ~ 8648440 (-) True XLOC_016163
TCONS_00031901 mRNA upstream 106485 9513160 ~ 9527210 (-) False XLOC_016170
TCONS_00031902 mRNA upstream 111627 9518302 ~ 9527129 (-) True XLOC_016170
TCONS_00031904 mRNA upstream 122848 9529523 ~ 9544161 (-) True XLOC_016171
TCONS_00031905 mRNA upstream 185644 9592319 ~ 9607879 (-) True XLOC_016172
TCONS_00031906 mRNA upstream 214614 9621289 ~ 9625548 (-) True XLOC_016173
TCONS_00031895 other downstream 721625 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031892 other downstream 771426 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031853 other downstream 2497877 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 2640151 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031833 other downstream 3361163 6042039 ~ 6045395 (-) False XLOC_016126
TCONS_00031903 other upstream 122813 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 281380 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031914 other upstream 340183 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031915 other upstream 340627 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031958 other upstream 1498387 10905062 ~ 10905179 (-) True XLOC_016199