RNA id: TCONS_00031901


Basic Information

Item Value
RNA id TCONS_00031901
length 1170
RNA type mRNA
GC content 0.45
exon number 10
gene id XLOC_016170
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9513160 ~ 9527210 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGATGAACCCGTTTCAGAAGTAGAAGAAGCCGCAGTTCGGTTACGTGGCTTTGACGTGGCCATAGTGATGTCGACAAGTTGACACTTCACAAACATGGCGTCTCAGCAAAGCGAAGTGGATGAGCTGTTCGATGTGAAAAACGCGTTTTACATAGGCAGTTATCAACACTGCATTAACGAAGCTCAGAAAGTAAAGACTTCAGGGCCAGAAAAGGAATCGGAGAAGAACATTTTCCTTTACAGAGCTTATATTGCCCAGagGAAGTATGGTGTGGTACTGGATGACATAAAGCCCAGTTCTACTGAGGAGCTGCAGGCTGTCCGAATGTTTGCCGAGTACCTGTCCAGTGAGGGGAAGAGGGATGCAATAGTAGCAGACCTGGATAAAAAGATATCTAAGAGTGTCGATGTTTCCAACACCACCTTCCTGCTGATGGCGGCTTCCATCTACTTGCATGAAATGAACACAGATGCGGCATTACGTACTCTGCATCAGGGAGAGAGTCTGGAGTGCATGGCCATGACTGTCCAGATTCTACTAAAGTTGGACAGAGTTGATATGGCAAGAAAAGAGCTAAAGAAGATGCAAGACCAAGATGAAGATGCTACTTTGACTCAACTCGCTACAGCCTGGGTCAACCTTGCGATTGGTGGAGAAAAGTTGCAGGATGCCTTCTATATCTTCCAGGAAATGTCAGACAAGTACTCGCCCACGCTGCTGCTGCTAAACGGTCAGGCTGCCAGTCACATGGCTCAGAATAAGTGGGATGAGGCGGAGTCAGTTCTACAGGATGCTCTGGACAAAGACAGCGGCCATCCGGAGACACTCATCAACCTCATTGTGTTGACACAACATATGGGCAAACCATTTGagGTTACAAATCGATATTTGTCTCAACTGAAAGATGCACACAAGTCGCATCCTTTTATTAAGGATTATCTTGCTAAGGAGAATGAATTTGACAGGCTTGTCATGCAGTACGCCCCCAGCGCCTGAAATAGTACCCAGTTTTAATTTATACGTCTCCTATGGTGCACCCCAATGttatttctttcatttcttttatgCCTTTAAACAAAAATGCATCCAGCTCCTTGTCTTTCTCAAATTCCCTAATGCTCTGTCTACATTCCTATATGATGGTTTAATAAACAGGTTGGTTTATCA

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-041114-59 Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon).

Ensembl:

ensembl_id ENSDART00000004398

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033775 lncRNA downstream 94072 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033774 lncRNA downstream 672276 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00031885 lncRNA downstream 1018444 8491044 ~ 8494716 (-) False XLOC_016159
TCONS_00033351 lncRNA upstream 219227 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 219227 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 219227 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00033776 lncRNA upstream 219227 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00033778 lncRNA upstream 219227 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031899 mRNA downstream 23549 9330146 ~ 9489611 (-) False XLOC_016168
TCONS_00031898 mRNA downstream 253158 9160947 ~ 9260002 (-) True XLOC_016167
TCONS_00031897 mRNA downstream 253877 9160947 ~ 9259283 (-) False XLOC_016167
TCONS_00031896 mRNA downstream 453205 8845840 ~ 9059955 (-) True XLOC_016166
TCONS_00031894 mRNA downstream 824401 8663108 ~ 8688759 (-) False XLOC_016164
TCONS_00031904 mRNA upstream 2313 9529523 ~ 9544161 (-) True XLOC_016171
TCONS_00031905 mRNA upstream 65109 9592319 ~ 9607879 (-) True XLOC_016172
TCONS_00031906 mRNA upstream 94079 9621289 ~ 9625548 (-) True XLOC_016173
TCONS_00031907 mRNA upstream 102348 9629558 ~ 9646857 (-) True XLOC_016174
TCONS_00031908 mRNA upstream 157095 9684305 ~ 9696283 (-) True XLOC_016175
TCONS_00031900 other downstream 106485 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031895 other downstream 828227 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031892 other downstream 878028 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031853 other downstream 2604479 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031851 other downstream 2746753 6766293 ~ 6766407 (-) True XLOC_016138
TCONS_00031903 other upstream 2278 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031909 other upstream 160845 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031914 other upstream 219648 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031915 other upstream 220092 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031958 other upstream 1377852 10905062 ~ 10905179 (-) True XLOC_016199

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_01969544_01973134.mRNA True 994 mRNA 0.48 8 CI01000003 1969330 ~ 1973134 (+)