RNA id: TCONS_00031907


Basic Information

Item Value
RNA id TCONS_00031907
length 1816
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_016174
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9629558 ~ 9646857 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTATACAATGCGCTGAAAGATGGTGCACCAGGAGAAATGTGTTTACCAGGCCCAGAGGAATGAGAGGGAGTCCATTAGGCAGAAGCTGGCCCTTGGCAGTTTCTATGACGACGGACCGATTACCTTTACTGGCTGTAGCAAGAGCGGCAAAAACTGCCTGTCCTCACGTCTTCAGAATGGGGTGAACCTACAGATGTGCTTTGTGAATGACAGCAGCAGTGACCGGGACAGTGATGCAGAGGACAGCAGAACAGAGACCAGCCTGGACACCCCATTGTCACCTATGAGTAAACAGAGTTCCTCTCTGTCAGACCGGGATACAGGAGAGGAAGACCTAGACTCGGAGGATTCGGAGTTCTGGCGGCTCCAGCGGCGGCTGCAGGAGGAGGCGCGTGTGGCTCTAGCTTTGGCCCGTCCCATGGCCCGCATGCAGGTGGAGGTGGAGAGACAAATTCAGATACACAGAAGGTCTCCTGTGGCAGACCTGTTACCCCATCTGCCACATATCAGTGAGTGTCTGATGAAGAGGAATCTGAGGCCTGTGGACATGAGGGATATGAGCCTTGGTCAGTTACAAGTCATCACCAATGATCTGCATTCTCAGATACAAggtctgaaTGAGGAGCTGGTTCAGCTTTTGCTAATGAGAGATGAACTCCACATGGAACAGGATGCCATGCTGGTAGATGTGGAAGATCTAACCAGGCATGCGCACAGCCAGCAGAGGCACATGATGGAGAAATCTCTGGGCAAAGGCAAATCAGCTTGCCACGGTGGCTGTGGTTCTCCATTCTAAAGACACAGAGAATAAACCCTTGCGTTTCACTATACGAAGAAGCAATGTACTAAATGTAGATCCCTTTTTTCCAACTAGTCGTGTGTGTAAAGCTTTGTGTGGATGTATGTTATTTATACATGCTGTGTTCATGCATGCTGGCACCTTGGGAAGTTTTAGTTCCTTGTCACTGTCCATCTGGCTCGCTCGGTCGGGGTCGGCGGAGCTGTGACATTCGTatgaaactgaactgaatcagttttaAGCAAACTAGAACTAGAATTCCACCTGCCTGACATGCTGAATATGTCCCACGAAGTGAAATGTTATGGCTTTTTTTCCGTGTTCATCCGTGTAAAgaggctttgacacaatttacagttatataaaaataaaaatgatttacttAAGGGTTATATATTAATACTGAAGGAAGGATATGAATCAAGATGGCATATTTTCCCGAATGTACACTTGTTGTTCTACACtccaaaaattatttttgctgtttgatCAAACtataaatagtgtttaaaatgagttgaaacaacaccattcttaaggttttttgggacaactgaAATGtcttatgtttaatccacttaaaagtgtaaaaaatatattgagtTAACTTTACTGATTTATGTTGGAACAAGATGAAGGAATCGTGTGGAACAAAGACATTGTAAGTCTCTTTGCactgaccaaaataacaaacaacttCAATAGAAGGctaattcacccaaaaatcactGATCAATTAACAAATGGCACAACCGTGTGAAGATATTTCATCTGTGTTTGtcctaaaaaatgcaaataaatcaaCATTGTTTGGTTGTCTTTCGCAGAAAttgtggaaaataaataaacaaacggcTTACAGTAATATGTGCTAGTGTGTTTTCGTTTTCATCTGTTTAGCACAGTCACAAGGGAAGAGGCACTCAACACCAAACAAGTGTCATTGTGGTTTGTGTTATAGGTCAgtcccaaaaatgaaacttcttgagttgaataaaaatctaaaaactgtgttt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0035332 positive regulation of hippo signaling biological_process
GO:0005575 cellular_component cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-79 Predicted to be involved in positive regulation of hippo signaling. Predicted to be active in cell junction and plasma membrane.

Ensembl:

ensembl_id ENSDART00000056901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033775 lncRNA downstream 210470 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033774 lncRNA downstream 788674 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00031883 lncRNA downstream 1135419 8491405 ~ 8494139 (-) True XLOC_016159
TCONS_00031881 lncRNA downstream 1135546 8491082 ~ 8494012 (-) False XLOC_016159
TCONS_00033351 lncRNA upstream 99580 9746437 ~ 9747547 (-) False XLOC_016178
TCONS_00031912 lncRNA upstream 99580 9746437 ~ 9748047 (-) False XLOC_016178
TCONS_00033350 lncRNA upstream 99580 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00033776 lncRNA upstream 99580 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00033778 lncRNA upstream 99580 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031906 mRNA downstream 4010 9621289 ~ 9625548 (-) True XLOC_016173
TCONS_00031905 mRNA downstream 21679 9592319 ~ 9607879 (-) True XLOC_016172
TCONS_00031904 mRNA downstream 85397 9529523 ~ 9544161 (-) True XLOC_016171
TCONS_00031901 mRNA downstream 102348 9513160 ~ 9527210 (-) False XLOC_016170
TCONS_00031902 mRNA downstream 102429 9518302 ~ 9527129 (-) True XLOC_016170
TCONS_00031908 mRNA upstream 37448 9684305 ~ 9696283 (-) True XLOC_016175
TCONS_00031910 mRNA upstream 55196 9702053 ~ 9744081 (-) True XLOC_016177
TCONS_00031913 mRNA upstream 99637 9746494 ~ 9748039 (-) False XLOC_016178
TCONS_00031916 mRNA upstream 142954 9789811 ~ 9818711 (-) False XLOC_016179
TCONS_00031918 mRNA upstream 142976 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031903 other downstream 85397 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 222883 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031895 other downstream 944625 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031892 other downstream 994426 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031853 other downstream 2720877 6908662 ~ 6908681 (-) True XLOC_016140
TCONS_00031909 other upstream 41198 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031914 other upstream 100001 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031915 other upstream 100445 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031958 other upstream 1258205 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 2009696 11656553 ~ 11662923 (-) True XLOC_016210

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_01893593_01901539.mRNA True 977 mRNA 0.50 6 CI01000003 1893593 ~ 1901769 (+)