RNA id: TCONS_00031914


Basic Information

Item Value
RNA id TCONS_00031914
length 136
RNA type snoRNA
GC content 0.42
exon number 1
gene id XLOC_016178
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9746437 ~ 9748216 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCCTTTTAGTGTTGCCTGTTCATCATTGCTTGTCAGATGAATGTGGTGTCAAATAGGGCATACATTAATACATGACATGGCCACTGAAAGGTATCTCCATCCTTGCCTTTCAGAGGCTTCATGTAATGGACACTT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000117609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033775 lncRNA downstream 327770 9330246 ~ 9419088 (-) True XLOC_016168
TCONS_00033774 lncRNA downstream 905974 8835922 ~ 8840884 (-) True XLOC_016165
TCONS_00031883 lncRNA downstream 1252719 8491405 ~ 8494139 (-) True XLOC_016159
TCONS_00031881 lncRNA downstream 1252846 8491082 ~ 8494012 (-) False XLOC_016159
TCONS_00031921 lncRNA upstream 57254 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00031924 lncRNA upstream 115840 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031942 lncRNA upstream 681900 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 875242 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 1209228 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031910 mRNA downstream 2777 9702053 ~ 9744081 (-) True XLOC_016177
TCONS_00031908 mRNA downstream 50575 9684305 ~ 9696283 (-) True XLOC_016175
TCONS_00031907 mRNA downstream 100001 9629558 ~ 9646857 (-) True XLOC_016174
TCONS_00031906 mRNA downstream 121310 9621289 ~ 9625548 (-) True XLOC_016173
TCONS_00031905 mRNA downstream 138979 9592319 ~ 9607879 (-) True XLOC_016172
TCONS_00031916 mRNA upstream 42818 9789811 ~ 9818711 (-) False XLOC_016179
TCONS_00031918 mRNA upstream 42840 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031917 mRNA upstream 42840 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031919 mRNA upstream 43479 9790472 ~ 9816532 (-) False XLOC_016179
TCONS_00031920 mRNA upstream 54611 9801604 ~ 9816492 (-) False XLOC_016179
TCONS_00031909 other downstream 58673 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 202697 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 340183 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031895 other downstream 1061925 8680942 ~ 8684933 (-) True XLOC_016164
TCONS_00031892 other downstream 1111726 8634240 ~ 8635132 (-) True XLOC_016162
TCONS_00031915 other upstream 309 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031958 other upstream 1158069 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1909560 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2477430 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3505159 13252152 ~ 13254797 (-) True XLOC_016221

Expression Profile

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