Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031917 |
| length | 2127 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 11 |
| gene id | XLOC_016179 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 9789811 ~ 9818711 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0006897 | endocytosis | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0072583 | clathrin-dependent endocytosis | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0030122 | AP-2 adaptor complex | cellular_component |
| GO:0030131 | clathrin adaptor complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005905 | clathrin-coated pit | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0035615 | clathrin adaptor activity | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-9784 | Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in blood; mesoderm; notochord; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1). |
| ensembl_id | ENSDART00000012442 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033778 | lncRNA | downstream | 41617 | 9746437 ~ 9748216 (-) | False | XLOC_016178 |
| TCONS_00033777 | lncRNA | downstream | 41617 | 9746437 ~ 9748216 (-) | False | XLOC_016178 |
| TCONS_00031911 | lncRNA | downstream | 41617 | 9746437 ~ 9748216 (-) | False | XLOC_016178 |
| TCONS_00033776 | lncRNA | downstream | 41672 | 9746437 ~ 9748161 (-) | False | XLOC_016178 |
| TCONS_00033350 | lncRNA | downstream | 41749 | 9746437 ~ 9748084 (-) | False | XLOC_016178 |
| TCONS_00031924 | lncRNA | upstream | 44160 | 9862833 ~ 9863388 (-) | True | XLOC_016181 |
| TCONS_00031942 | lncRNA | upstream | 610220 | 10428893 ~ 10432848 (-) | True | XLOC_016191 |
| TCONS_00031950 | lncRNA | upstream | 803562 | 10622235 ~ 10632377 (-) | True | XLOC_016194 |
| TCONS_00031964 | lncRNA | upstream | 1137548 | 10956221 ~ 11027191 (-) | True | XLOC_016200 |
| TCONS_00031975 | lncRNA | upstream | 1432424 | 11251097 ~ 11258378 (-) | True | XLOC_016203 |
| TCONS_00031913 | mRNA | downstream | 41794 | 9746494 ~ 9748039 (-) | False | XLOC_016178 |
| TCONS_00031910 | mRNA | downstream | 45752 | 9702053 ~ 9744081 (-) | True | XLOC_016177 |
| TCONS_00031908 | mRNA | downstream | 93550 | 9684305 ~ 9696283 (-) | True | XLOC_016175 |
| TCONS_00031907 | mRNA | downstream | 142976 | 9629558 ~ 9646857 (-) | True | XLOC_016174 |
| TCONS_00031906 | mRNA | downstream | 164285 | 9621289 ~ 9625548 (-) | True | XLOC_016173 |
| TCONS_00031923 | mRNA | upstream | 29963 | 9848636 ~ 9857932 (-) | True | XLOC_016180 |
| TCONS_00031925 | mRNA | upstream | 49928 | 9868601 ~ 9915814 (-) | False | XLOC_016182 |
| TCONS_00031926 | mRNA | upstream | 50385 | 9869058 ~ 9915870 (-) | True | XLOC_016182 |
| TCONS_00031927 | mRNA | upstream | 139408 | 9958081 ~ 9971651 (-) | False | XLOC_016183 |
| TCONS_00031928 | mRNA | upstream | 139408 | 9958081 ~ 9971728 (-) | False | XLOC_016183 |
| TCONS_00031915 | other | downstream | 42402 | 9747302 ~ 9747431 (-) | True | XLOC_016178 |
| TCONS_00031914 | other | downstream | 42840 | 9746858 ~ 9746993 (-) | False | XLOC_016178 |
| TCONS_00031909 | other | downstream | 101648 | 9688055 ~ 9688185 (-) | True | XLOC_016176 |
| TCONS_00031903 | other | downstream | 245672 | 9529488 ~ 9544161 (-) | False | XLOC_016171 |
| TCONS_00031900 | other | downstream | 383158 | 9406558 ~ 9406675 (-) | True | XLOC_016169 |
| TCONS_00031958 | other | upstream | 1086389 | 10905062 ~ 10905179 (-) | True | XLOC_016199 |
| TCONS_00031983 | other | upstream | 1837880 | 11656553 ~ 11662923 (-) | True | XLOC_016210 |
| TCONS_00031991 | other | upstream | 2405750 | 12224423 ~ 12224539 (-) | True | XLOC_016216 |
| TCONS_00031998 | other | upstream | 3433479 | 13252152 ~ 13254797 (-) | True | XLOC_016221 |
| TCONS_00032033 | other | upstream | 5175720 | 14994393 ~ 14994490 (-) | True | XLOC_016250 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000004_01937296_01943730.mRNA | True | 900 | mRNA | 0.50 | 8 | CI01000004 | 1937296 ~ 1943730 (+) |
