RNA id: TCONS_00031921


Basic Information

Item Value
RNA id TCONS_00031921
length 199
lncRNA type retained_intron
GC content 0.51
exon number 2
gene id XLOC_016179
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9789811 ~ 9818711 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCAGACTAAGGAGGAACAGTCTCAGATCACCAGCCAGGTGACGGGTCAAATCGGTTGGCGTCGTGAAGGCATCAAGTACCGCCGCAATGAGCTCTTCCTGGATGTGCTGGAGAGTGTCAACTTGCTTATGTCTCCCCAGGGTAAGGACAGCATTATCTTAAGTCtcagttctctttagcttgaaggcgtagggctaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0030122 AP-2 adaptor complex cellular_component
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0035615 clathrin adaptor activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9784 Predicted to enable clathrin adaptor activity. Acts upstream of or within Wnt signaling pathway. Predicted to be located in clathrin-coated pit. Predicted to be part of AP-2 adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in blood; mesoderm; notochord; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human AP2M1 (adaptor related protein complex 2 subunit mu 1).

Ensembl:

ensembl_id ENSDART00000132903

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033778 lncRNA downstream 56031 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00033777 lncRNA downstream 56031 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031911 lncRNA downstream 56031 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00033776 lncRNA downstream 56086 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00033350 lncRNA downstream 56163 9746437 ~ 9748084 (-) False XLOC_016178
TCONS_00031924 lncRNA upstream 58286 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031942 lncRNA upstream 624346 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 817688 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 1151674 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 1446550 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031913 mRNA downstream 56208 9746494 ~ 9748039 (-) False XLOC_016178
TCONS_00031910 mRNA downstream 60166 9702053 ~ 9744081 (-) True XLOC_016177
TCONS_00031908 mRNA downstream 107964 9684305 ~ 9696283 (-) True XLOC_016175
TCONS_00031907 mRNA downstream 157390 9629558 ~ 9646857 (-) True XLOC_016174
TCONS_00031906 mRNA downstream 178699 9621289 ~ 9625548 (-) True XLOC_016173
TCONS_00031922 mRNA upstream 3523 9808070 ~ 9818640 (-) True XLOC_016179
TCONS_00031923 mRNA upstream 44089 9848636 ~ 9857932 (-) True XLOC_016180
TCONS_00031925 mRNA upstream 64054 9868601 ~ 9915814 (-) False XLOC_016182
TCONS_00031926 mRNA upstream 64511 9869058 ~ 9915870 (-) True XLOC_016182
TCONS_00031927 mRNA upstream 153534 9958081 ~ 9971651 (-) False XLOC_016183
TCONS_00031915 other downstream 56816 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 57254 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 116062 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 260086 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 397572 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 1100515 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1852006 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2419876 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3447605 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 5189846 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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