RNA id: TCONS_00031923


Basic Information

Item Value
RNA id TCONS_00031923
length 2961
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_016180
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9848636 ~ 9857932 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGGATTCTCAGAGGTTTTTACTTCTCGTCTGTCTCACGATGTGCGGCAGAGACATTGAAAGTGCATCTGAAATAAGGTTGCCAGATCATCAAAGCAGATCATCTCATGTCCAGAACCGATATTCAATATACGCTTCAAGACGCCCCTCGGTTCCCTACACCGTCATTCATCCCAGCAGAACCGGCAGTCTGAGAGAAAATCCGAGGACCATCACGGCTGAGGTGTTGAACCCACAGGGTGGTTGCACGGGTGGAGGTTGCCATGGCTCGCAGAGACCAGCAAACAACCACACAAAAGAGTGCAAAGGCATCGGATGTAAACTGCCTGTAAGGATGCGACAAGATCCCAAACAGCATTCCTGTGTTGGAGACGCCTGCAGCACAGGGTCAGATGCTGGAAGGAGCAGACTGTCTTTTGTCCATATGCAGGACAGAGCCGAGCAAGTATCGGTGGAATTTCCGGAGTTGGGGACTCAAGGGGGTCCATCATCTGGGATTCAGTTAACATGCGACATTAAGCCAGGCACAAATGAGGTCAATTCTGAAGATGCTTTAGTGCTGCATTTGCACTTGGCAAAGGGTCAGGATAAACTGGTTGCACAGCTGCATGGGCAGCAAGAGGAGGTTAAACAAATCCAGAGCGCGCTGAGAGAACAGCAAAGTGCTCTTCTAGCCCACCAAAGAGAAATACTGGACCAACAACGGATCATGTTTGACAAGATGGATGAAGTCAAGACTCAATACAGCCTTCTTCTTGACAGTGTCAAACAGTTGACTGTAGTAAGCCCACAAGGAGGCATTGAGAGTCATTTGGAAGGTCTCCAATCTCAGGTTAGGACCTATTCTCAAGAAGCCTTCACAATGCATAAGATGAACATGGATGCTAGTGTTACGGATGCTGACAGACCTCTTATTGGATGTGGATCCTGCCAAACAGATGAGTATTGTGACTTCAGCGCTGAGAAGCCCCGTTGTGAGAGATGCACCGTTTGCCCTCCAGGATTCTTTCTGGTTGCTCAGTGTTCAACTCATTCTGATAGGATCTGCCAGGACAGAGACGAATGCCTAGAGATACCAAACCTTTGTAAAGAACACAACCAGTGCCTCAACACTCCAGGAGGGTTTCGATGCTCCGACATGTCGGAGAGACTAGCAGCTGCTGGGATTTGTGGCCACTCTTATTTTTACAACTCTGAGATGGAGGAGTGTCAAGCTTGTACAGAATGTGATTCTCAGCCAATGATATCCCCATGCTCAGCGGTGAGTGATGCAGTGTGTGCCAACCCATCCGAAAGCAAACTCTCTCTGTCCTGGTCAGGAAGTGTCGACCTTCCTAAGGGTAGTGAGCTTACTGATAAGCAACTTCACATCCGTGGCAACAGCGATGGACGCCTTCTTTCCTGCACGGATGGTTGGATAGTCCTATACCAGCATGGTCTTGTTTGGGTTGACCATAACCTTGCTTTAAAACATGGCTGCCGCAGCTTTGTTCAAGCGTGTTTACGATTGAATGCCAGTGAAGATGGAGGTCGGGATTTGAGTGGTATGCGTTTGGAGCAGCGGGACACCAGGTCTCTCCAAAGTGCCAGTGTGAGTGGAGCCACGGCCGTGGAGCCGGGACACATACTTTACCTTTCACTCAAGAGTGCCACCAACCAGTGTAGCCAAAACAATGATGACGTCCACCTGCAGGGCAGCCTATTGTCACCTTTCAGTCTGCTCTGGTTGTCCCATGACACGGGTGCAGTGGCTATGACTGCCCAGGCCGTTGCCTCTGCACATTACCACACCAACTACCGTCCTGCCTTCCGGACGTCATCCATCTCTGACCCCTATGTGGTCAGCCTGACTCATGACAATCGTGGTGTCCGCTTCAGGGAAAGTGGCACTGTGAAGTTTGTCCTTCAGCAAGCATTGTACTCCATGGGTCAAGCCTGCATCTCAGAGGGTTTCTACTTACTTGCATACCTGAACCGCAACGGGAGCAGTGCTGAGCTGACTCGTGCATTCAAGCCTGGCGTTCACTACAGAGACACATCCATATCTCTGTCAGCTGCCACCACTGTGGATTCTGGAGATATGCTCACCTTCGAGATCCTCGCGCCTACACAGTGCAACGTTCGCTACTTCGGCGATGACTCTGGGATTAGCATTCTCAGTCTTCTTTGGATCCCTTCTTCGATGTCCACAGCCTTGTCGGCTTCTGTGTCGAGGAAAGGTCTTCCTACAGGTGCAGTTAGGAATAAGGCCTTGTTCTTCCATCAGACGACTACATCAGTTAAACAGGTCGCACTTGCTGGAACCAAAGATCACAGAGACTTCATCTTTCGGGAAGCTGGGACAGCTAGCGTGGCCTTAGATCTCCGGCTTATCCATTCTTGCAGTTTAATTAAACTCACCTTGCTTCAGCAGAACGGGTCTCAGGGGGTTCAACCAGCTCCTGTAGCTCAACAAATCGGTGGGCAAATGCCAGAAGGAAGTTTGTGGGCAAGTGTGGGACTGAGGGTATCGTTTCAGGTGCTTAATGGCACTGTAATCTTTGCTACAGTGGATTGTGTGAGGGGGCGCATTAATCAAATTGCCTATGATGCCGGAAGTAGCATTTCTATCCTATGGGCTGCTGCATGATCTTAGCATGATTCAGTTAGCATGCAGATCTGTGTACTTTATGAAttaagcctgttttttttttgttatgttttatttcgggattaattagttaataaatagGATTAATGAACTTTTACAGCCAAAACAATAAATTGCTTTAGAGtagattattatgcatttttaaatggaaaaaagttaacaaaatttgacttttttatgattatttacacattttaatgtGACTGTTGTATGTTTTGATTCCATAAGTTTTGTATAACATTTTCCTttcattatggtggcttgagaaagccaacatactgttatactacataaacttatCCTTCTTCC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-629 Predicted to enable calcium ion binding activity.

Ensembl:

ensembl_id ENSDART00000154490

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031921 lncRNA downstream 44089 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033778 lncRNA downstream 100420 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00033777 lncRNA downstream 100420 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031911 lncRNA downstream 100420 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00033776 lncRNA downstream 100475 9746437 ~ 9748161 (-) False XLOC_016178
TCONS_00031924 lncRNA upstream 4901 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031942 lncRNA upstream 570961 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 764303 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 1098289 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 1393165 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031916 mRNA downstream 29925 9789811 ~ 9818711 (-) False XLOC_016179
TCONS_00031918 mRNA downstream 29963 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031917 mRNA downstream 29963 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031922 mRNA downstream 29996 9808070 ~ 9818640 (-) True XLOC_016179
TCONS_00031919 mRNA downstream 32104 9790472 ~ 9816532 (-) False XLOC_016179
TCONS_00031925 mRNA upstream 10669 9868601 ~ 9915814 (-) False XLOC_016182
TCONS_00031926 mRNA upstream 11126 9869058 ~ 9915870 (-) True XLOC_016182
TCONS_00031927 mRNA upstream 100149 9958081 ~ 9971651 (-) False XLOC_016183
TCONS_00031928 mRNA upstream 100149 9958081 ~ 9971728 (-) False XLOC_016183
TCONS_00031929 mRNA upstream 101128 9959060 ~ 9971609 (-) True XLOC_016183
TCONS_00031915 other downstream 101205 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 101643 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 160451 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 304475 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 441961 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 1047130 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1798621 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2366491 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3394220 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 5136461 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01917089_01920203.mRNA True 4590 mRNA 0.42 4 CI01000004 1915626 ~ 1920705 (+)