RNA id: TCONS_00031925


Basic Information

Item Value
RNA id TCONS_00031925
length 2016
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_016182
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9868601 ~ 9915870 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGCCAGGCGAGGGACCTCCTGTTGGAGAGTGAAGCTCCGCTGGTTTCAATGAAAGAGGGGGAGAAGAGTAATGCAGAGGGATGTAAGATGGCAGAGCTACAAATGTTGTTAGAGGAAGAAATCCCAGCAGGAAAAAGAGCCCTTGTGGAGAGCTACCAGAACCTTTCAAGGGTTGCGGAATATTGCGAGAACAATTATGTGCAGGCACAAGACAAGAGGAAAGCCCTCGAGGAGACCAAAGCCTACACCACCCAGTCCCTGGCAAGCGTGGCCTATCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGTTGGATATTCAGGCTTCACAGCTGCGCAGGATGGAGTCCTCCATCAACCATATCTCTCAGACTGTGGACATTCATAAAGAGAAAGTCGCCAGACGAGAGATCGGGATTCTCACCACCAACAAAAACACGTCTCGGACCCACAAGATCATCGCCCCGGGCAACATGGAGCGACCCGTGCGCTACATCAGGAAGCCCATAGATTACACCCTGCTGGATGATGTGGGTCACGGTGTTAAACAAGGGAATAACCAACCGGCTCGGGGAGGTGGAGGAACATTATCCAGGACCAACCCACCAACACAGAAGCCCCCAAGTCCACCCATGGCAGGGAGAGGGACCCTGGGACGAAACACTCCATATAAGACTCTTGAGCCAGTCAAGCCTCCTGTGGTGCCTAATGACTACATGACCAGTCCAGCACGCCTGGGCAGCCAGAACAGCCCGGGACGCACAGCCTCACTCAACCAGAGACCCAGAACACACAGTGGCAGTAGTGGGGGCAGCGGCGGTCGGGAGAACAGCAGTAACAGTATGGGAATCCCTCTGGCCGTGCCTACACCCTCCCCTCCCAGTATGGCACCAGCAGTTCCTCCAGGTCCAGGTTTGGGCCCAATCCCGATGTCTCAGTTTGGAACGATTTCCCGGCAGATCTCCAGACACAATTCCTCCACCACTTCTTCTTCCGCCTCTATGGTGTCAGCCACCGGGACCTACCGCCGCGCCCCTGCCAGCTCCTCCCAGTTCTCTGTGCCTCAGCCCCACCTAAACGGGGGTCCCACATTCCCTCAGACCACAATGACTGTCGCTCCACCGCCGCCTCCAGTGGTGCAGCTGACGCCCCAGATTCCCCTCACTGGCTTTGTGGCCAGAGTTCAGGAGAACATAACAGACAGTCCATCTCCACCACCGCCGCCTCTTCCTGAGGACACGCCCCTGTTCGAGGAAGCAGCCCCGCCCCCTCCACCCCCACCTGTGGATTACGATGAAGAAGATGCTGCTCTGGTGCATTACAATGACCCCTATGCTGATGGAGACCCTCACTGGGCCCCAAAATCCTACATAGAAAAGGTGGTGGCTATCTATGACTACTCAAAAGACAAAGACGACGAGCTGTCCTTCATGGAGGGCGCCATCATCTACATCATCAAGAAGAACGATGACGGCTGGTTTGAGGGTGTGTGTAACGGTGTGACCGGACTGTTTCCTGGTAACTACGTCGAATCCATCATGCACTACGCTGACTAATACCCAATCCCAGAGACATGCAGCGCAGCCAATCAGTTACAAGCATTGCAAAGTGCATTAGGATATGACTGAATGTGACAATGTTTTTGTCCAATCGCCAATGTATCAAGCATCTACAGTGCTCACTGTTTGAGGAAACGGGGCTCGTATCGCCTCCGCAAAGAAACAAACAAGTCTCAATTCTTTCTGGTTAGGTTGCCTCATGTGTTTTGTACATATATTGCAGTGACACGTTGCCTGTAGGCTGTTGCTAGTGTTTGTTTTGTGCGTGTTTCGTCATTGTACTGAGATCGTATTTGCCAAGTGTCAGCCAGGGctagttagtttttatttttttatcatttttgtttttgctcaTCTTTATTTAAACTCTAATGCTCTTCCTTTGTGTGAGGAGGAAGTGTTTGAATGTCATTATTATGCCGGCTAAAtaattaggcaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0030027 lamellipodium cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0030296 protein tyrosine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1182 Predicted to enable SH3 domain binding activity. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI1 (abl interactor 1).

Ensembl:

ensembl_id ENSDART00000091644

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031924 lncRNA downstream 5213 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 64054 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033778 lncRNA downstream 120385 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00033777 lncRNA downstream 120385 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031911 lncRNA downstream 120385 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031942 lncRNA upstream 513079 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 706421 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 1040407 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 1335283 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 1414910 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031923 mRNA downstream 10669 9848636 ~ 9857932 (-) True XLOC_016180
TCONS_00031916 mRNA downstream 49890 9789811 ~ 9818711 (-) False XLOC_016179
TCONS_00031918 mRNA downstream 49928 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031917 mRNA downstream 49928 9789833 ~ 9818673 (-) False XLOC_016179
TCONS_00031922 mRNA downstream 49961 9808070 ~ 9818640 (-) True XLOC_016179
TCONS_00031927 mRNA upstream 42267 9958081 ~ 9971651 (-) False XLOC_016183
TCONS_00031928 mRNA upstream 42267 9958081 ~ 9971728 (-) False XLOC_016183
TCONS_00031929 mRNA upstream 43246 9959060 ~ 9971609 (-) True XLOC_016183
TCONS_00031930 mRNA upstream 46054 9961868 ~ 10014821 (-) True XLOC_016184
TCONS_00031931 mRNA upstream 67265 9983079 ~ 9989947 (-) False XLOC_016185
TCONS_00031915 other downstream 121170 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 121608 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 180416 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 324440 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 461926 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 989248 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1740739 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2308609 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3336338 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 5078579 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01883020_01908403.mRNA True 1996 mRNA 0.52 10 CI01000004 1883020 ~ 1908634 (+)