RNA id: TCONS_00031929


Basic Information

Item Value
RNA id TCONS_00031929
length 769
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_016183
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 9958081 ~ 9971728 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGAACAGCTCGATTAAACTCTGCATCTGATCAGAAGACGCTGTCCAAGAACACCAACATCCACTGCAGACGCCAGTAACCCAAATTCATATCAGCTGCTTAACACGGGCAGGAAATATAAACGTGACACACCCAGATATGGATTTAGGTTCAGTGTTTTTGTCAACACAGATAGACTGAGCTCCATGTCAGACTACATGCTACTAAATTCAGGTGCAGTAGAGAGTGCCATGCAGGAAGGAGAGGAGAGGAAGTGAGGCGATGGGCTGCACCTCAGCCAAGCAGTTGTCATCTGTACCCAGTGATGAAGAGGGCCGGGGTAAGGCCTACAGCAACGGAGATGCCTTCTCCGATGAGTACAAGCTGAAAGGAGTTGAGAAGGTGAAGTACATGCATGGAGAAGAGGAGCACACGAATACCAGAAACCAAGAGAActtgGAAAAGAGCACACTTTTGCACAAGGGCCGGCATAAAGATGCCACCGGAAATGGAAATAAGAtaagTATCCACTCTTCAGAAAGCCAGCAGGAGTTCTTCAGGATGCTGGATGAGAAGATTGAAAAGGGACGGGACTACTGCTCGGAGGACGAGGATATGACATAGCATGCTGGGAATTTTGACTCCGACCAACAGCGAGTCAATCCGGTCCCATAATTCCTTTCAGCTCATTTCCATGCCTCCTTACCCAGCGAGTGCTAATCTTCAAGTGACTCTCTGCCCTGTCATTCGCTCTGTTTACAGTCCACACAACCTCCCGAATATCTTCCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2013 Orthologous to human C1orf21 (chromosome 1 open reading frame 21).

Ensembl:

ensembl_id ENSDART00000137924

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031924 lncRNA downstream 95672 9862833 ~ 9863388 (-) True XLOC_016181
TCONS_00031921 lncRNA downstream 154513 9804247 ~ 9804547 (-) False XLOC_016179
TCONS_00033778 lncRNA downstream 210844 9746437 ~ 9748216 (-) False XLOC_016178
TCONS_00031942 lncRNA upstream 457284 10428893 ~ 10432848 (-) True XLOC_016191
TCONS_00031950 lncRNA upstream 650626 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00031964 lncRNA upstream 984612 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031975 lncRNA upstream 1279488 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031976 lncRNA upstream 1359115 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031926 mRNA downstream 43190 9869058 ~ 9915870 (-) True XLOC_016182
TCONS_00031925 mRNA downstream 43246 9868601 ~ 9915814 (-) False XLOC_016182
TCONS_00031923 mRNA downstream 101128 9848636 ~ 9857932 (-) True XLOC_016180
TCONS_00031922 mRNA downstream 140420 9808070 ~ 9818640 (-) True XLOC_016179
TCONS_00031920 mRNA downstream 142568 9801604 ~ 9816492 (-) False XLOC_016179
TCONS_00031931 mRNA upstream 11470 9983079 ~ 9989947 (-) False XLOC_016185
TCONS_00031932 mRNA upstream 12376 9983985 ~ 9989919 (-) True XLOC_016185
TCONS_00031933 mRNA upstream 84491 10056100 ~ 10062575 (-) True XLOC_016186
TCONS_00031934 mRNA upstream 115725 10087334 ~ 10098191 (-) True XLOC_016187
TCONS_00031935 mRNA upstream 212031 10183640 ~ 10188598 (-) False XLOC_016188
TCONS_00031915 other downstream 211629 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 212067 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 270875 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 414899 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031900 other downstream 552385 9406558 ~ 9406675 (-) True XLOC_016169
TCONS_00031958 other upstream 933453 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031983 other upstream 1684944 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 2252814 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 3280543 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 5022784 14994393 ~ 14994490 (-) True XLOC_016250

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU187245 False 2223 TUCP 0.45 6 NC_035912.1 2478781 ~ 2486751 (-)